9OS5 | pdb_00009os5

Human antibody Fab MPV498 bound to hMPV B2 post-fusion F


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.61 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9OS5

This is version 1.1 of the entry. See complete history

Literature

Structural basis for childhood antibody recognition of the human metapneumovirus fusion protein.

Khalil, A.M.Ghazi Esfahani, B.Miller, R.J.Huang, J.Kuan, G.Balmaseda, A.Gordon, A.Mousa, J.J.

(2025) Nat Commun 17: 1267-1267

  • DOI: https://doi.org/10.1038/s41467-025-68021-8
  • Primary Citation Related Structures: 
    9OS5, 9PDX, 9PDY

  • PubMed Abstract: 

    Human metapneumovirus (hMPV) is a significant cause of acute respiratory illness in children and older adults, with most children becoming seropositive by five years of age. The hMPV fusion (F) protein is the sole target of neutralizing antibodies, and while most common B-cell-targeted neutralizing epitopes on the hMPV F protein have been determined in hMPV-infected adults, the antibody response in hMPV-infected children remains undefined. We isolate five human monoclonal antibodies (mAbs) from hMPV-infected children, and evaluate their binding avidity, neutralization potency, epitope specificity, and in vivo efficacy. All mAbs are neutralizing, and epitope binning reveals four different epitopes targeted by the mAbs. Cryo-EM structures of four mAbs in complex with the hMPV F protein reveal epitopes on the hMPV F trimer surface as well as an intratrimer epitope located completely within the hMPV F trimer interface. Furthermore, we determine the prophylactic efficacy of the mAbs in protection against hMPV challenge in mice. These findings provide new insights into the immunodominant antigenic epitopes on the hMPV F protein in children and identify new mAbs for hMPV F disease prevention.


  • Organizational Affiliation
    • Department of Biomedical Sciences, College of Medicine, Florida State University, Tallahassee, FL, USA.

Macromolecule Content 

  • Total Structure Weight: 378.71 kDa 
  • Atom Count: 14,897 
  • Modeled Residue Count: 1,936 
  • Deposited Residue Count: 3,462 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Fusion glycoprotein F0
A, B, C, D, E
A, B, C, D, E, F
465human metapneumovirusMutation(s): 0 
UniProt
Find proteins for Q6W8S4 (human metapneumovirus)
Explore Q6W8S4 
Go to UniProtKB:  Q6W8S4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6W8S4
Glycosylation
Glycosylation Sites: 2
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
MPV498 Fab heavy chainG,
I [auth H],
K [auth I]
124Homo sapiensMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
MPV498 Fab light chainH [auth J],
J [auth K],
L
100Homo sapiensMutation(s): 0 

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG

Query on NAG



Download:Ideal Coordinates CCD File
M [auth A]
N [auth B]
O [auth B]
P [auth C]
Q [auth D]
M [auth A],
N [auth B],
O [auth B],
P [auth C],
Q [auth D],
R [auth D],
S [auth E],
T [auth F],
U [auth F]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.61 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.1_5286

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01AI143865

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-03
    Type: Initial release
  • Version 1.1: 2026-03-18
    Changes: Data collection, Database references