9OM7 | pdb_00009om7

BtCap14 SAVED domain + 2',3'-cGAMP


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9OM7

This is version 1.2 of the entry. See complete history

Literature

Bacterial 2',3'-cGAMP activates a SAVED effector to form membrane-disrupting filaments and restrict phage replication.

Tak, U.Schinkel, K.Walth, P.Tay, J.W.Hartwick, E.W.Whiteley, A.T.

(2026) Cell Host Microbe 34: 720

  • DOI: https://doi.org/10.1016/j.chom.2026.03.004
  • Primary Citation Related Structures: 
    9OM7

  • PubMed Abstract: 

    Mammalian cells initiate antiviral signaling when cyclic GMP-AMP synthase (cGAS) detects cytoplasmic DNA and synthesizes 2',3'-cyclic GMP-AMP (2',3'-cGAMP), which activates stimulator of interferon genes (STING). Similarly, bacteria use cyclic oligonucleotide-based antiphage signaling systems (CBASS) to detect phage using ancestral cGAS/DncV-like nucleotidyltransferases (CD-NTases), but they are not known to use 2',3'-cGAMP. Here, we discover a bacterial CD-NTase that produces 2',3'-cGAMP to activate a Saf-2TM-SMODS-associated fused to various effector domains (SAVED) effector (CD-NTase-associated protein 14 [Cap14]), which initiates membrane disruption to restrict phage replication. Cryo-electron microscopy (cryo-EM) reveals that Cap14 binds 2',3'-cGAMP to form a filament, while electrophysiology suggests that cGAMP activates membrane disruption. Swapping the Cap14 transmembrane domain with a nuclease domain yields a functional chimera that exclusively responds to 2',3'-cGAMP. We hypothesize that other predicted transmembrane effectors in CBASS operons disrupt membranes, and we confirm this by showing that bacterial STING homologs with transmembrane domains restrict phage through membrane disruption. These findings expand our understanding of cGAS-STING-like pathways in bacterial immunity.


  • Organizational Affiliation
    • Department of Biochemistry, University of Colorado Boulder, Boulder, CO, USA.

Macromolecule Content 

  • Total Structure Weight: 261.68 kDa 
  • Atom Count: 13,130 
  • Modeled Residue Count: 1,573 
  • Deposited Residue Count: 2,256 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
SAVED domain-containing protein376Bacillus thuringiensis Bt407Mutation(s): 0 
Gene Names: FLM80_14620
UniProt
Find proteins for A0AAP4Q8A7 (Bacillus thuringiensis)
Explore A0AAP4Q8A7 
Go to UniProtKB:  A0AAP4Q8A7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0AAP4Q8A7
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/Office of the DirectorUnited StatesDP2AT012346

Revision History  (Full details and data files)

  • Version 1.0: 2026-04-01
    Type: Initial release
  • Version 1.1: 2026-04-08
    Changes: Data collection, Database references
  • Version 1.2: 2026-04-22
    Changes: Data collection, Database references