9OKA | pdb_00009oka

Cardiac lambda-6 light chain amyloid AL-224L single protofilament


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.92 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM of cardiac AL-224L amyloid reveals shared structural motifs and mutation-induced differences in lambda 6 light chain fibrils.

Hicks, C.W.Prokaeva, T.Spencer, B.Jayaraman, S.Huda, N.Wong, S.Chen, H.Sanchorawala, V.Lavatelli, F.Gursky, O.

(2025) J Mol Biology : 169591-169591

  • DOI: https://doi.org/10.1016/j.jmb.2025.169591
  • Primary Citation of Related Structures:  
    9OKA

  • PubMed Abstract: 

    In light chain amyloidosis (AL), aberrant monoclonal antibody light chains (LCs) deposit in vital organs causing organ damage. Each AL patient features a unique LC; previous cryogenic electron microscopy (cryo-EM) studies revealed different amyloid structures in different AL patients. How LC mutations influence amyloid structures remains unclear. We report a cryo-EM structure of cardiac AL-224L amyloid (2.92 Å resolution) from λ6-LC family, which is overrepresented in AL amyloidosis. Comparison with λ6-LC structures from two other patients reveals similarities in amyloid folds, along with major differences caused by specific mutations. Differences in AL-224L include altered C-terminal conformation with an exposed surface forming an apparent ligand-binding site; an enlarged hydrophilic pore with orphan density; and altered steric zipper registry with backbone flipping, which likely represent general adaptive mechanisms in amyloids. The results reveal shared features in λ6-LC amyloid folds and suggest how mutation-induced structural changes influence amyloid-ligand interactions in a patient-specific manner.


  • Organizational Affiliation
    • Department of Pharmacology, Physiology & Biophysics, Chobanian & Avedisian School of Medicine, Boston University, Boston, MA, USA. Electronic address: hickscw@bu.edu.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Immunoglobulin l6 light-chain AL-224LA [auth E],
B [auth C],
C [auth D],
D [auth B],
E [auth A]
116Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.92 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIXdev_4788

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesS10OD032253
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM135158
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM067260

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-24
    Type: Initial release
  • Version 1.1: 2025-12-31
    Changes: Data collection, Database references