9OFA | pdb_00009ofa

The structure of a Fungal Cyanide Hydratase from Gloeocercospora sorghi


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.04 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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This is version 1.0 of the entry. See complete history


Literature

The single-particle cryo-EM structures of a bacterial cyanide dihydratase and a fungal cyanide hydratase.

Justo Arevalo, S.Valle-Riestra Felice, V.Barahona Acuna, M.Ordinola Flores, K.Quinones Aguilar, M.Balan, A.Farah, C.S.

(2026) Structure 

  • DOI: https://doi.org/10.1016/j.str.2026.01.009
  • Primary Citation of Related Structures:  
    9ODT, 9OFA

  • PubMed Abstract: 

    Cyanide is widely used in industries due to its affinity for metals, a property that also underlies its toxicity. Industries, therefore, must reduce cyanide concentration before the final disposal of wastewater. Physical, chemical, and biological methods have been developed for this; however, knowledge about the structure of enzymes involved in cyanide degradation remains limited. Structural characterization of these proteins could facilitate the development of enzymes with enhanced bioremediation potential. Here, we present the single-particle cryo-electron microscopy structures of a cyanide dihydratase from Bacillus safensis and a cyanide hydratase from Gloeocercospora sorghi at 2.2 Å and 2.0 Å resolution, respectively. We provide a comprehensive description and comparative analysis alongside all previously determined nitrilase structures. Importantly, our full-length structures reveal new features in the C-terminal as well as specific intermolecular interactions between protomer interfaces and within the helix lumen. Finally, our findings offer insights into the reaction mechanisms of these two enzymes.


  • Organizational Affiliation
    • Departamento de Bioquimica, Instituto de Quimica - Universidade de São Paulo, São Paulo, Brazil; Facultad de Ciencias Biologicas - Universidad Ricardo Palma, Santiago de Surco, Peru. Electronic address: santiago.jus.are@usp.br.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cyanide hydratase368Microdochium sorghiMutation(s): 0 
Gene Names: cht
EC: 4.2.1.66
UniProt
Find proteins for P32964 (Microdochium sorghi)
Explore P32964 
Go to UniProtKB:  P32964
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP32964
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.04 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.6.2

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Sao Paulo Research Foundation (FAPESP)Brazil2022/00943-1
Sao Paulo Research Foundation (FAPESP)Brazil2021/10577-0
Sao Paulo Research Foundation (FAPESP)Brazil2024/02456-6

Revision History  (Full details and data files)

  • Version 1.0: 2026-02-25
    Type: Initial release