9OCC | pdb_00009occ

Sf11 bacteriophage tail

  • Classification: VIRUS
  • Organism(s): Shigella phage Sf11 SMD-2017
  • Mutation(s): No 

  • Deposited: 2025-04-24 Released: 2025-11-12 
  • Deposition Author(s): Subramanian, S., Parent, K.N.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Science Foundation (NSF, United States)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history. 

Literature

Structure of Shigella bacteriophage Sf11

Subramanian, S., Dover, J.A., Parent, K.N.

To be published.

Macromolecule Content 

  • Total Structure Weight: 714.51 kDa 
  • Atom Count: 14,930 
  • Modeled Residue Count: 1,889 
  • Deposited Residue Count: 6,664 
  • Unique protein chains: 6

Macromolecules

Find similar proteins by:
|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Putative neck whiskers protein gp24
A, B
238Shigella phage Sf11 SMD-2017Mutation(s): 0 
UniProt
Find proteins for A0A291AXD7 (Shigella phage Sf11 SMD-2017)
Explore A0A291AXD7 
Go to UniProtKB:  A0A291AXD7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A291AXD7
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Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Tail fiber protein gp17
C, D
457Shigella phage Sf11 SMD-2017Mutation(s): 0 
UniProt
Find proteins for A0A291AXC9 (Shigella phage Sf11 SMD-2017)
Explore A0A291AXC9 
Go to UniProtKB:  A0A291AXC9
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A291AXC9
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Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Putative tail protein gp14828Shigella phage Sf11 SMD-2017Mutation(s): 0 
UniProt
Find proteins for A0A291AXC5 (Shigella phage Sf11 SMD-2017)
Explore A0A291AXC5 
Go to UniProtKB:  A0A291AXC5
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A291AXC5
Sequence Annotations
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Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
gp16156Shigella phage Sf11 SMD-2017Mutation(s): 0 
UniProt
Find proteins for A0A291AXG1 (Shigella phage Sf11 SMD-2017)
Explore A0A291AXG1 
Go to UniProtKB:  A0A291AXG1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A291AXG1
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Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Putative tail protein gp13
G, H, I, J, K
G, H, I, J, K, L
585Shigella phage Sf11 SMD-2017Mutation(s): 0 
UniProt
Find proteins for A0A291AXF7 (Shigella phage Sf11 SMD-2017)
Explore A0A291AXF7 
Go to UniProtKB:  A0A291AXF7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A291AXF7
Sequence Annotations
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Reference Sequence
Find similar proteins by:
|  3D Structure
Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Tail tape measure protein gp18780Shigella phage Sf11 SMD-2017Mutation(s): 0 
UniProt
Find proteins for A0A291AXC6 (Shigella phage Sf11 SMD-2017)
Explore A0A291AXC6 
Go to UniProtKB:  A0A291AXC6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A291AXC6
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

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View more in-depth experimental data

Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM116789
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM140803
National Science Foundation (NSF, United States)United States1750125

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-12
    Type: Initial release