9O6V | pdb_00009o6v

Recombinant AD PHF complexed with SW-MK-NBD (PHF2)

PDB DOI: https://doi.org/10.2210/pdb9O6V/pdb
EM Map EMD-70182: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-04-14 Released: 2026-04-22
Deposition Author(s): Kunach, P., Diamond, M.I.
Funding Organization(s): Cancer Prevention and Research Institute of Texas (CPRIT), National Institutes of Health/National Institute of Mental Health (NIH/NIMH), Canadian Institutes of Health Research (CIHR)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Development of a tau amyloid dye from a PET ligand

Kunach, P., Diamond, M.I.

To be published.

Macromolecule Content

Total Structure Weight: 86.96 kDa
Atom Count: 6,130
Modeled Residue Count: 750
Deposited Residue Count: 750
Unique protein chains: 1

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Microtubule-associated protein tau	A [auth F] B [auth G] C [auth H] D [auth I] E [auth J] A [auth F], B [auth G], C [auth H], D [auth I], E [auth J], F [auth N], G [auth O], H [auth P], I [auth Y], J [auth Z]	75	Homo sapiens	Mutation(s): 0 Gene Names: MAPT, MAPTL, MTBT1, TAU
UniProt & NIH Common Fund Data Resources
Find proteins for P10636 (Homo sapiens) Explore P10636 Go to UniProtKB: P10636
PHAROS: P10636 GTEx: ENSG00000186868
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P10636
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A1B91 (Subject of Investigation/LOI) Query on A1B91 Download:Ideal Coordinates CCD File SDF format, chain T [auth Z] SDF format, chain S [auth Z] SDF format, chain R [auth Y] SDF format, chain Q [auth O] SDF format, chain P [auth N] SDF format, chain O [auth J] SDF format, chain N [auth J] SDF format, chain M [auth I] SDF format, chain L [auth G] SDF format, chain K [auth F] MOL2 format, chain T [auth Z] MOL2 format, chain S [auth Z] MOL2 format, chain R [auth Y] MOL2 format, chain Q [auth O] MOL2 format, chain P [auth N] MOL2 format, chain O [auth J] MOL2 format, chain N [auth J] MOL2 format, chain M [auth I] MOL2 format, chain L [auth G] MOL2 format, chain K [auth F] mmCIF format, chain T [auth Z] mmCIF format, chain S [auth Z] mmCIF format, chain R [auth Y] mmCIF format, chain Q [auth O] mmCIF format, chain P [auth N] mmCIF format, chain O [auth J] mmCIF format, chain N [auth J] mmCIF format, chain M [auth I] mmCIF format, chain L [auth G] mmCIF format, chain K [auth F]	K [auth F] L [auth G] M [auth I] N [auth J] O [auth J] K [auth F], L [auth G], M [auth I], N [auth J], O [auth J], P [auth N], Q [auth O], R [auth Y], S [auth Z], T [auth Z]	7-nitro-N-[2-(2-{[(3P)-3-(1H-pyrrolo[2,3-c]pyridin-1-yl)isoquinolin-7-yl]oxy}ethoxy)ethyl]-2,1,3-benzoxadiazol-4-amine C₂₆ H₂₁ N₇ O₅ KMCVVSQCRQPMQB-UHFFFAOYSA-N		Interactions Focus chain K [auth F] Focus chain L [auth G] Focus chain M [auth I] Focus chain N [auth J] Focus chain O [auth J] Focus chain P [auth N] Focus chain Q [auth O] Focus chain R [auth Y] Focus chain S [auth Z] Focus chain T [auth Z] Interactions & Density Focus chain K [auth F] Focus chain L [auth G] Focus chain M [auth I] Focus chain N [auth J] Focus chain O [auth J] Focus chain P [auth N] Focus chain Q [auth O] Focus chain R [auth Y] Focus chain S [auth Z] Focus chain T [auth Z]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.72 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1
RECONSTRUCTION	RELION	4.0

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-04-22

Deposition Author(s):

Kunach, P.

Diamond, M.I.

Funding Organization	Location	Grant Number
Cancer Prevention and Research Institute of Texas (CPRIT)	United States	RP170644
National Institutes of Health/National Institute of Mental Health (NIH/NIMH)	United States	R35GM122481
Canadian Institutes of Health Research (CIHR)	Canada	MOP-11-51-31
Canadian Institutes of Health Research (CIHR)	Canada	152985