9O4R | pdb_00009o4r

Phosphonull (S56A) of stress-activating residues

PDB DOI: https://doi.org/10.2210/pdb9O4R/pdb
EM Map EMD-70112: EMDB EMDataResource

Classification: TRANSCRIPTION
Organism(s): Listeria monocytogenes
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-04-08 Released: 2026-05-06
Deposition Author(s): Martinez-Bond, E.A., Lopez-Ayala, I., Qiu, L., Garda, V., Yu, Z., Williams, A.H.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Chan Zuckerberg Initiative

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Phosphonull (T175A) of stress-activating residues

Martinez-Bond, E.A., Lopez-Ayala, I., Lobanovska, M., Qiu, L., Zhao, Z., Garda, V., Yu, Z., Portnoy, D.A., Williams, A.H.

To be published.

Macromolecule Content

Total Structure Weight: 1,517.99 kDa
Atom Count: 57,760
Modeled Residue Count: 7,640
Deposited Residue Count: 13,480
Unique protein chains: 2

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RsbR	A AA [auth M] B [auth AB] BA [auth MB] CA [auth N] A, AA [auth M], B [auth AB], BA [auth MB], CA [auth N], DA [auth NB], E [auth B], EA [auth O], F [auth BB], FA [auth OB], G [auth C], GA [auth P], H [auth CB], HA [auth PB], I [auth D], IA [auth Q], J [auth DB], JA [auth QB], K [auth E], KA [auth R], L [auth EB], LA [auth RB], M [auth F], MA [auth S], N [auth FB], NA [auth SB], O [auth G], OA [auth T], P [auth GB], PA [auth TB], Q [auth H], R [auth HB], S [auth I], T [auth IB], U [auth J], V [auth JB], W [auth K], X [auth KB], Y [auth L], Z [auth LB]	278	Listeria monocytogenes	Mutation(s): 0 Gene Names: rsbR, rsbra, A8L61_02205, AB917_06055, ABZ57_01205, AJL21_11595, AJL21_16610, ART25_01260, ARY78_01760, B1N52_01980... rsbR, rsbra, A8L61_02205, AB917_06055, ABZ57_01205, AJL21_11595, AJL21_16610, ART25_01260, ARY78_01760, B1N52_01980, B1S26_02045, B5K54_03420, BB997_02140, BCZ21_01050, CA369_02175, CAC64_11150, CAV64_00900, CW895_01155, D4920_04100, D4B11_12895, D5N24_01410, D7104_06705, DCT16_02105, DQ70_02095, DU018_08835, DYZ80_00353, E1W56_02355, E5F58_02030, E5H26_04030, EX365_01790, EXZ73_11755, F6436_03580, FA835_02005, FC284_05485, FLQ97_01695, FLR03_04330, FNX40_11545, G3O21_000716, GI949_06455, GJW51_01585, GQG13_02275, GYS09_04305, GYX23_13120, GYY14_01065, HQN34_000548, HZJ64_00925, IP987_001914, KV70_05945, QD52_01795, UI29_01810, Y261_01720
UniProt
Find proteins for Q8GD19 (Listeria monocytogenes) Explore Q8GD19 Go to UniProtKB: Q8GD19
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8GD19
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
RsbT antagonist protein RsbS	AB [auth g] BB [auth gb] C [auth a] CB [auth h] D [auth ab] AB [auth g], BB [auth gb], C [auth a], CB [auth h], D [auth ab], DB [auth hb], EB [auth i], FB [auth ib], GB [auth j], HB [auth jb], QA [auth b], RA [auth bb], SA [auth c], TA [auth cb], UA [auth d], VA [auth db], WA [auth e], XA [auth eb], YA [auth f], ZA [auth fb]	118	Listeria monocytogenes	Mutation(s): 0 Gene Names: rsbs, rsbS, A3R20_02220, A8L61_02200, AB917_06050, ABZ57_01200, AE233_01838, AF817_04135, AJL21_11600, AJL21_16615... rsbs, rsbS, A3R20_02220, A8L61_02200, AB917_06050, ABZ57_01200, AE233_01838, AF817_04135, AJL21_11600, AJL21_16615, AP104_09905, APD94_04425, ARR48_04430, ART25_01265, ARY78_01755, B1N52_01975, B1S26_02040, B4X68_06890, B5K54_03415, BB997_02145, BCZ19_01990, BCZ21_01045, BES38_03995, CA369_02170, CAC64_11145, CAV64_00905, CD20_08965, CW845_09085, CW895_01150, D4271_06060, D4920_04105, D4B11_12890, D4C60_07325, D4D89_06750, D4U23_01975, D5M70_11465, D5N24_01415, D7104_06700, DCK61_03360, DCT16_02110, DG57_12350, DOV25_10305, DQ70_02100, DU018_08830, DYZ50_02397, DYZ80_00352, E0I39_06815, E1V33_07140, E1W43_02220, E1W56_02360, E1X78_01785, E5F58_02025, E5H26_04025, EX365_01785, EXZ73_11750, F1788_04060, F6436_03575, F6515_03435, FA835_02010, FC284_05490, FJU19_06655, FLQ97_01690, FLR03_04325, FNX40_11540, FPL45_04955, FV747_04700, FZX01_04925, G3O21_000715, G3R95_001384, GCV64_04085, GHH22_07635, GHO09_07360, GI230_10345, GI949_06450, GIH49_03255, GJW51_01580, GQG13_02280, GT011_04115, GYO01_03260, GYP27_11040, GYR60_01075, GYS09_04300, GYX23_13115, GYY14_01060, GZK27_12030, HQN34_000549, HZJ64_00920, IP987_001913, KV70_05940, QD52_01790, UI29_01805, Y261_01715
UniProt
Find proteins for A0A0D8X5U2 (Listeria monocytogenes) Explore A0A0D8X5U2 Go to UniProtKB: A0A0D8X5U2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0D8X5U2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.76 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-05-06

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	NIGMS1R01GM144694
Chan Zuckerberg Initiative	United States	7030219