9O36 | pdb_00009o36

CryoEM structure of mu-opioid receptor - Gi protein complex bound to fluornitrazene (FNZ)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9O36

This is version 1.2 of the entry. See complete history

Literature

A μ-opioid receptor superagonist analgesic with minimal adverse effects.

Gomez, J.L.Ventriglia, E.N.Frangos, Z.J.Sulima, A.Robertson, M.J.Sacco, M.D.Budinich, R.C.Giosan, I.M.Xie, T.Solis, O.Tischer, A.E.Bossert, J.M.Caldwell, K.E.Bonbrest, H.Essmann, A.Garcon-Poca, Z.M.Choi, S.Noya, M.R.Limiac, F.Arce, A.Glatfelter, G.C.Robinson, M.Chen, L.Mullarkey, A.A.Brademan, D.R.Enten, G.Dunne, W.Quiroz, C.Schoenborn, I.Lee, C.B.Rais, R.Holt, D.P.Dannals, R.F.Shi, L.Huttenhain, R.Ferre, S.Kiyatkin, E.Bonaventura, J.Shaham, Y.Zachariou, V.Baumann, M.H.Skiniotis, G.Rice, K.C.Michaelides, M.

(2026) Nature 652: 1393-1404

  • DOI: https://doi.org/10.1038/s41586-026-10299-9
  • Primary Citation Related Structures: 
    9O36

  • PubMed Abstract: 

    Developing safe and effective pain medications is an ongoing challenge for human health. Agonists for the µ-opioid receptor (MOR) are essential pain medications, but their high intrinsic efficacy also induces adverse side effects, including respiratory depression, constipation, tolerance, dependence, withdrawal and addiction 1-7 . Strategies to limit adverse effects traditionally include developing MOR agonists that have low intrinsic efficacy or that preferentially activate G-protein signalling over β-arrestin signalling 8 . Here we identify a novel MOR agonist with supramaximal intrinsic efficacy and a unique pharmacological profile that produced effective analgesia in rodents with minimal adverse effects. N-desethyl-fluornitrazene (DFNZ) was derived from a class of synthetic benzimidazole opioids called nitazenes. DFNZ has impaired brain penetrance, a unique spatiotemporal MOR cellular signalling profile, and diminished efficacy at the MOR-galanin 1 receptor (GAL1) heteromer. DFNZ does not induce respiratory depression, tolerance or MOR downregulation after repeated exposure. Compared with other MOR agonists, DFNZ has limited effects on dopamine neurotransmission in nucleus accumbens and weaker reinforcing effects in the drug self-administration procedure. These results provide novel insights about MOR and nitazene pharmacology, have important implications for pain and addiction treatment, and challenge the prevailing dogma that high-efficacy MOR agonists cannot constitute safe and effective therapeutic agents.


  • Organizational Affiliation
    • Biobehavioral Imaging and Molecular Neuropsychopharmacology Section, National Institute on Drug Abuse Intramural Research Program, Baltimore, MD, USA.

Macromolecule Content 

  • Total Structure Weight: 162.06 kDa 
  • Atom Count: 8,330 
  • Modeled Residue Count: 1,116 
  • Deposited Residue Count: 1,454 
  • Unique protein chains: 5

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(i) subunit alpha-1354Homo sapiensMutation(s): 0 
Gene Names: GNAI1
EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for P63096 (Homo sapiens)
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Go to UniProtKB:  P63096
PHAROS:  P63096
GTEx:  ENSG00000127955 
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UniProt GroupP63096
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1344Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
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Go to UniProtKB:  P62873
PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-271Homo sapiensMutation(s): 0 
Gene Names: GNG2
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens)
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PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
scFv16D [auth E]259Mus musculusMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Mu-type opioid receptorE [auth R]426Mus musculusMutation(s): 0 
Gene Names: Oprm1MorOprm
UniProt
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1B79
(Subject of Investigation/LOI)

Query on A1B79



Download:Ideal Coordinates CCD File
F [auth R]N,N-diethyl-2-(2-{[4-(2-fluoroethoxy)phenyl]methyl}-5-nitro-1H-1,3-benzimidazol-1-yl)ethan-1-amine
C22 H27 F N4 O3
XCWWXPKOMYPTRP-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2026-04-01
    Type: Initial release
  • Version 1.1: 2026-04-15
    Changes: Data collection, Database references
  • Version 1.2: 2026-05-13
    Changes: Data collection, Database references