9O0E | pdb_00009o0e

Adeno-associated virus 9 variant 496-AAA-498

PDB DOI: https://doi.org/10.2210/pdb9O0E/pdb
EM Map EMD-49970: EMDB EMDataResource

Classification: VIRUS LIKE PARTICLE
Organism(s): Adeno-associated virus 9
Expression System: Homo sapiens
Mutation(s): Yes

Deposited: 2025-04-02 Released: 2025-07-30
Deposition Author(s): Choi, H., Hou, C.F.D., Firnberg, E., Wei, H., Petrou, V.I., Kaelber, J.T.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 9O0E

This is version 1.0 of the entry. See complete history.

Literature

Performance of low-voltage cryo-electron microscopes

Choi, H., Hou, C.F.D., Firnberg, E., Wei, H., Petrou, V.I., Kaelber, J.T.

To be published.

Macromolecule Content

Total Structure Weight: 58.35 kDa
Atom Count: 4,096
Modeled Residue Count: 514
Deposited Residue Count: 518
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP1	A	518	Adeno-associated virus 9	Mutation(s): 3 Gene Names: cap
UniProt
Find proteins for Q6JC40 (Adeno-associated virus 9) Explore Q6JC40 Go to UniProtKB: Q6JC40
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6JC40
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.40 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4
MODEL REFINEMENT	PHENIX	1.19.2

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-07-30

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2025-07-30
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.