9NZZ | pdb_00009nzz

Adeno-associated virus 9 variant AAV9.AAA.VQVGRTS

• PDB DOI: https://doi.org/10.2210/pdb9NZZ/pdb
• EM Map EMD-49965: EMDB EMDataResource

• Classification: VIRUS LIKE PARTICLE
• Organism(s): Adeno-associated virus 9
• Expression System: Homo sapiens
• Mutation(s): Yes 


• Deposited: 2025-04-01 Released: 2025-07-23 
• Deposition Author(s): Choi, H., Hou, C.F.D., Firnberg, E., Wei, H., Petrou, V.I., Kaelber, J.T.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 1.84 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental

Literature

Performance of low-voltage cryo-electron microscopes

Choi, H., Hou, C.F.D., Firnberg, E., Wei, H., Petrou, V.I., Kaelber, J.T.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 60-mer - A60 

Biological assembly 1 assigned by authors and generated by UCSF CHIMERA 1.14_b42094. (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 59.07 kDa 
• Atom Count: 4,687 
• Modeled Residue Count: 515 
• Deposited Residue Count: 525 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP1	A	525	Adeno-associated virus 9	Mutation(s): 3  Gene Names: cap
UniProt
Find proteins for Q6JC40 (Adeno-associated virus 9) Explore Q6JC40  Go to UniProtKB:  Q6JC40

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 1.84 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4
MODEL REFINEMENT	PHENIX	1.19.2

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-07-23 
Deposition Author(s): Choi, H., Hou, C.F.D., Firnberg, E., Wei, H., Petrou, V.I., Kaelber, J.T.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2025-07-23
  Type: Initial release