9NO6 | pdb_00009no6

Structure of csTOS the Terpinolene Synthase from Cannabis sativa


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 
    0.270 (Depositor), 0.269 (DCC) 
  • R-Value Work: 
    0.217 (Depositor), 0.217 (DCC) 
  • R-Value Observed: 
    0.220 (Depositor) 

Starting Model: experimental
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Literature

The product specificities of terpinolene synthase, from cannabis sativa, reveals the plasticity of the terpene synthase active site.

Wiles, D.Roest, J.Vivian, J.P.Beddoe, T.

(2025) J Struct Biol 217: 108227-108227

  • DOI: https://doi.org/10.1016/j.jsb.2025.108227
  • Primary Citation Related Structures: 
    9NO6

  • PubMed Abstract: 

    Cannabis sativa is a high-value plant renowned for its diverse chemical composition and abundant terpene content, contributing to its unique aroma, flavour, and therapeutic effects. Terpenes significantly influence consumer preference for C. sativa products, driving scientific interest in optimising terpene expression profiles and shaping the selective breeding of terpene profiles in C. sativa cultivars. In particular, the monoterpene, terpinolene, is influential in defining the sensory and therapeutic qualities of many C. sativa strains due to its woody, citrus-like aroma. Here we report the 2.5 Å resolution crystal structure of terpinolene synthase (CsTOS) from C. sativa in its apo form. The structure exhibits the class I monoterpene synthase fold with an open active site conformation. Using site-directed mutagenesis, we identified H618 as a key residues in determining product specificity. Substituting H618 with charged residues resulted in the preferential formation of limonene over terpinolene, highlighting its critical role in stabilising the substrate intermediate. Additionally, novel mutations uncovered an extended epistatic network of residues within 5 Å of the active site, spanning the α-helical bundle of the terpene synthase fold. These interactions contribute to monoterpene formation by modulating substrate positioning and catalytic activity. These insights advance our understanding of monoterpene biosynthesis and enable the targeted engineering of terpene synthases for customised terpene production, offering significant potential for the C. sativa industry.


  • Organizational Affiliation
    • ARC Research Hub for Medicinal Agriculture, La Trobe University, Bundoora 3083, Australia; Department of Animal, Plant, and Soil Science, La Trobe University, Bundoora 3083, Australia.

Macromolecule Content 

  • Total Structure Weight: 74.88 kDa 
  • Atom Count: 4,251 
  • Modeled Residue Count: 493 
  • Deposited Residue Count: 639 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Terpinolene synthase639Cannabis sativaMutation(s): 0 
UniProt
Find proteins for A0A5C1IZK1 (Cannabis sativa)
Explore A0A5C1IZK1 
Go to UniProtKB:  A0A5C1IZK1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A5C1IZK1
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free:  0.270 (Depositor), 0.269 (DCC) 
  • R-Value Work:  0.217 (Depositor), 0.217 (DCC) 
  • R-Value Observed: 0.220 (Depositor) 
Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 47.03α = 90
b = 118.413β = 90
c = 204.948γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
pointlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-09
    Type: Initial release
  • Version 1.1: 2025-09-17
    Changes: Database references