9NMO | pdb_00009nmo

Structure of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)

  • Classification: TRANSPORT PROTEIN
  • Organism(s): Mus musculus
  • Mutation(s): No 

  • Deposited: 2025-03-04 Released: 2025-10-08 
  • Deposition Author(s): Weninger, G., Marks, A.R.
  • Funding Organization(s): National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis for simvastatin-induced skeletal muscle weakness associated with type 1 ryanodine receptor T4709M mutation.

Weninger, G.Dridi, H.Reiken, S.Yuan, Q.Zhao, N.Groom, L.Leigh, J.Liu, Y.Tchagou, C.Kang, J.Chang, A.Luna-Figueroa, E.Miotto, M.C.Wronska, A.Dirksen, R.T.Marks, A.R.

(2025) J Clin Invest 135

  • DOI: https://doi.org/10.1172/JCI194490
  • Primary Citation of Related Structures:  
    9NMN, 9NMO, 9NMP, 9NMQ, 9NMR

  • PubMed Abstract: 

    Statins lower cholesterol, reducing the risk of heart disease, and are among the most frequently prescribed drugs. Approximately 10% of individuals develop statin-associated muscle symptoms (SAMS; myalgias, rhabdomyolysis, and muscle weakness), often rendering them statin intolerant. The mechanism underlying SAMS remains poorly understood. Patients with mutations in the skeletal muscle ryanodine receptor 1 (RyR1)/calcium release channel can be particularly intolerant of statins. High-resolution structures revealed simvastatin binding sites in the pore region of RyR1. Simvastatin stabilized the open conformation of the pore and activated the RyR1 channel. In a mouse expressing a mutant RyR1-T4709M found in a patient with profound statin intolerance, simvastatin caused muscle weakness associated with leaky RyR1 channels. Cotreatment with a Rycal drug that stabilizes the channel closed state prevented simvastatin-induced muscle weakness. Thus, statin binding to RyR1 can cause SAMS, and patients with RyR1 mutations may represent a high-risk group for statin intolerance.


  • Organizational Affiliation
    • Department of Physiology and Cellular Biophysics, Clyde and Helen Wu Center for Molecular Cardiology, Vagelos College of Physicians and Surgeons, Columbia University Medical Center, New York, New York, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ryanodine receptor 1A,
F [auth B],
G [auth C],
H [auth D]
5,035Mus musculusMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for E9PZQ0 (Mus musculus)
Explore E9PZQ0 
Go to UniProtKB:  E9PZQ0
IMPC:  MGI:99659
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE9PZQ0
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Peptidyl-prolyl cis-trans isomerase FKBP1AB [auth E],
C [auth F],
D [auth G],
E [auth H]
108Mus musculusMutation(s): 0 
EC: 5.2.1.8
UniProt
Find proteins for P26883 (Mus musculus)
Explore P26883 
Go to UniProtKB:  P26883
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP26883
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PCW
Query on PCW

Download Ideal Coordinates CCD File 
BA [auth C]
CA [auth C]
IA [auth D]
JA [auth D]
N [auth A]
BA [auth C],
CA [auth C],
IA [auth D],
JA [auth D],
N [auth A],
O [auth A],
U [auth B],
V [auth B]
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
C44 H85 N O8 P
SNKAWJBJQDLSFF-NVKMUCNASA-O
ATP (Subject of Investigation/LOI)
Query on ATP

Download Ideal Coordinates CCD File 
AA [auth C]
FA [auth D]
HA [auth D]
K [auth A]
M [auth A]
AA [auth C],
FA [auth D],
HA [auth D],
K [auth A],
M [auth A],
R [auth B],
T [auth B],
Y [auth C]
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
CFF (Subject of Investigation/LOI)
Query on CFF

Download Ideal Coordinates CCD File 
EA [auth D],
J [auth A],
Q [auth B],
X [auth C]
CAFFEINE
C8 H10 N4 O2
RYYVLZVUVIJVGH-UHFFFAOYSA-N
ZN
Query on ZN

Download Ideal Coordinates CCD File 
DA [auth D],
I [auth A],
P [auth B],
W [auth C]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
CA (Subject of Investigation/LOI)
Query on CA

Download Ideal Coordinates CCD File 
GA [auth D],
L [auth A],
S [auth B],
Z [auth C]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesR01 HL145473

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-08
    Type: Initial release
  • Version 1.1: 2025-12-24
    Changes: Data collection, Database references