9NCK | pdb_00009nck

Nanotube of computationally designed peptide assembly R3K (16 protofilament)

PDB DOI: https://doi.org/10.2210/pdb9NCK/pdb
EM Map EMD-49259: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): synthetic construct
Mutation(s): No

Deposited: 2025-02-16 Released: 2026-02-18
Deposition Author(s): Das, A., Conticello, V.
Funding Organization(s): National Science Foundation (NSF, United States)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.58 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Nanotube of computationally designed peptide assembly R3K (16 protofilament)

Das, A., Conticello, V.

To be published.

Macromolecule Content

Total Structure Weight: 502.82 kDa
Atom Count: 34,880
Modeled Residue Count: 4,800
Deposited Residue Count: 4,800
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bundlemer nanotube	A AA [auth q] AB [auth DA] AC [auth aA] AD [auth N] A, AA [auth q], AB [auth DA], AC [auth aA], AD [auth N], AE [auth JB], AF [auth gB], B [auth U], BA [auth r], BB [auth EA], BC [auth bA], BD [auth xA], BE [auth KB], BF [auth hB], C [auth V], CA [auth s], CB [auth FA], CC [auth K], CD [auth yA], CE [auth LB], CF [auth iB], D [auth W], DA [auth t], DB [auth GA], DC [auth cA], DD [auth zA], DE [auth MB], DF [auth jB], E [auth X], EA [auth u], EB [auth H], EC [auth dA], ED [auth 0A], EE [auth NB], F [auth Y], FA [auth v], FB [auth HA], FC [auth eA], FD [auth 1A], FE [auth OB], G [auth Z], GA [auth E], GB [auth IA], GC [auth fA], GD [auth 2A], GE [auth R], H [auth a], HA [auth w], HB [auth JA], HC [auth gA], HD [auth 3A], HE [auth PB], I [auth B], IA [auth x], IB [auth KA], IC [auth hA], ID [auth O], IE [auth QB], J [auth b], JA [auth y], JB [auth LA], JC [auth iA], JD [auth 4A], JE [auth RB], K [auth c], KA [auth z], KB [auth MA], KC [auth L], KD [auth 5A], KE [auth SB], L [auth d], LA [auth 0], LB [auth NA], LC [auth jA], LD [auth 6A], LE [auth TB], M [auth e], MA [auth 1], MB [auth I], MC [auth kA], MD [auth 7A], ME [auth UB], N [auth f], NA [auth 2], NB [auth OA], NC [auth lA], ND [auth 8A], NE [auth VB], O [auth g], OA [auth F], OB [auth PA], OC [auth mA], OD [auth 9A], OE [auth S], P [auth h], PA [auth 3], PB [auth QA], PC [auth nA], PD [auth AB], PE [auth WB], Q [auth C], QA [auth 4], QB [auth RA], QC [auth oA], QD [auth P], QE [auth XB], R [auth i], RA [auth 5], RB [auth SA], RC [auth pA], RD [auth BB], RE [auth YB], S [auth j], SA [auth 6], SB [auth TA], SC [auth M], SD [auth CB], SE [auth ZB], T [auth k], TA [auth 7], TB [auth UA], TC [auth qA], TD [auth DB], TE [auth aB], U [auth l], UA [auth 8], UB [auth J], UC [auth rA], UD [auth EB], UE [auth bB], V [auth m], VA [auth 9], VB [auth VA], VC [auth sA], VD [auth FB], VE [auth cB], W [auth n], WA [auth G], WB [auth WA], WC [auth tA], WD [auth GB], WE [auth T], X [auth o], XA [auth AA], XB [auth XA], XC [auth uA], XD [auth HB], XE [auth dB], Y [auth D], YA [auth BA], YB [auth YA], YC [auth vA], YD [auth Q], YE [auth eB], Z [auth p], ZA [auth CA], ZB [auth ZA], ZC [auth wA], ZD [auth IB], ZE [auth fB]	30	synthetic construct	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence