9NAW | pdb_00009naw

H-1 Parvovirus VLP

PDB DOI: https://doi.org/10.2210/pdb9NAW/pdb
EM Map EMD-49205: EMDB EMDataResource

Classification: VIRUS
Organism(s): H-1 parvovirus
Expression System: Baculoviridae sp.
Mutation(s): No

Deposited: 2025-02-13 Released: 2025-03-19
Deposition Author(s): Busuttil, K.B., Bennett, A.B., McKenna, R.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Mapping the Sialic Acid Binding Sites of LuIII and H-1 Parvovirus

Busuttil, K.B., Bennett, A.B.

To be published.

Macromolecule Content

Total Structure Weight: 3,744.8 kDa
Atom Count: 265,620
Modeled Residue Count: 33,540
Deposited Residue Count: 33,540
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein	A AA [auth Z] AB [auth t] B [auth 8] BA [auth 1] A, AA [auth Z], AB [auth t], B [auth 8], BA [auth 1], BB [auth u], C, CA [auth 2], CB [auth v], D [auth B], DA [auth 3], DB [auth w], E [auth D], EA [auth 4], EB [auth x], F [auth E], FA [auth 5], FB [auth y], G [auth F], GA [auth 6], GB [auth z], H [auth G], HA [auth a], HB [auth 7], I [auth H], IA [auth b], J [auth I], JA [auth c], K [auth J], KA [auth d], L [auth K], LA [auth e], M [auth L], MA [auth f], N [auth M], NA [auth g], O [auth N], OA [auth h], P [auth O], PA [auth i], Q [auth P], QA [auth j], R [auth Q], RA [auth k], S [auth R], SA [auth l], T [auth S], TA [auth m], U [auth T], UA [auth n], V [auth U], VA [auth o], W [auth V], WA [auth p], X [auth W], XA [auth q], Y [auth X], YA [auth r], Z [auth Y], ZA [auth s]	559	H-1 parvovirus	Mutation(s): 0
UniProt
Find proteins for P03136 (Hamster parvovirus H1) Explore P03136 Go to UniProtKB: P03136
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P03136
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.59 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.10-2155_2155

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-03-19

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM082946

Revision History (Full details and data files)

Version 1.0: 2025-03-19
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.