9N4D | pdb_00009n4d

Cryo-EM structure of Candida albicans pH regulated antigen 1 (Pra1) protein in complex with Zn2+


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


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Literature

Structural insights into mechanisms of zinc scavenging by the Candida albicans zincophore Pra1.

Nore, A.Roselletti, E.Chakraborty, T.Sarkka, N.Perera, R.L.Wilson, D.Syrjanen, J.L.

(2025) Nat Commun 16: 10753-10753

  • DOI: https://doi.org/10.1038/s41467-025-65782-0
  • Primary Citation of Related Structures:  
    9N47, 9N4D

  • PubMed Abstract: 

    Candida albicans causes over 400,000 life-threatening, and an additional half a billion of mucosal infections annually. In response to infection, the host limits essential micronutrient availability, including zinc, to restrict growth of the invading pathogen. As assimilation of zinc is essential for C. albicans pathogenicity, limitation induces secretion of the zincophore protein Pra1 to scavenge zinc from the host. Pra1 also plays a number of important roles in host-pathogen interactions and is conserved in most fungi. However, the structure of fungal zincophores is unknown. Here, we present cryo-EM structures of C. albicans Pra1 in apo- and zinc-bound states, at 2.8 and 2.5 Å resolution respectively. Our work reveals a hexameric ring with multiple zinc binding sites. Through genetic studies, we show that these sites are essential for C. albicans growth under zinc restriction but do not affect the inflammatory properties of Pra1. These data create a foundation for future work to explore the structural basis of Pra1-mediated host-pathogen interactions, C. albicans zinc uptake, as well as therapeutics development.


  • Organizational Affiliation
    • Faculty of Health and Life Sciences, Medical Research Council Center for Medical Mycology, Geoffrey Pope Building, University of Exeter, Exeter, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
pH-regulated antigen PRA1
A, B, C, D, E
A, B, C, D, E, F
286Candida albicansMutation(s): 0 
Gene Names: PRA1FBP1CAALFM_C406980WACaO19.10623CaO19.3111
UniProt
Find proteins for P87020 (Candida albicans (strain SC5314 / ATCC MYA-2876))
Explore P87020 
Go to UniProtKB:  P87020
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP87020
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419
MODEL REFINEMENTCoot0.9.8.7
RECONSTRUCTIONcryoSPARC4.4

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentFinland--

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-10
    Type: Initial release