9N32 | pdb_00009n32

PilU from Pseudomonas aeruginosa: C3ocococ conformation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.54 Å
  • R-Value Free: 
    0.299 (Depositor), 0.294 (DCC) 
  • R-Value Work: 
    0.282 (Depositor), 0.280 (DCC) 
  • R-Value Observed: 
    0.283 (Depositor) 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


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Literature

Separation of Pseudomonas aeruginosa type IV pilus-dependent twitching motility and surface-sensing responses.

Barnshaw, R.Harvey, H.McCallum, M.Lazarou, T.Nguyen, S.Qaderi, I.Tran, V.Roberge, N.Geiger, C.O'Toole, G.A.Howell, P.L.Burrows, L.L.

(2025) mBio 16: e0252125-e0252125

  • DOI: https://doi.org/10.1128/mbio.02521-25
  • Primary Citation of Related Structures:  
    9N32

  • PubMed Abstract: 

    Many functions of Pseudomonas aeruginosa type IVa pili, including twitching motility and surface sensing, depend on dynamic cycles of filament assembly and disassembly powered by the cytoplasmic ATPases PilB, PilT, and PilU. Deletion of pilT results in loss of twitching and pilus-specific bacteriophage susceptibility, while non-twitching pilU mutants remain susceptible to pilus-specific phages, indicating that they still produce retractable pili. pilU mutants have high basal levels of the secondary messenger cyclic AMP (cAMP) that normally increases following surface contact, suggesting aberrant surface sensing. To better understand PilU's role in pilus biology, we solved its X-ray crystal structure and used phylogenetic analyses to identify conserved differences between PilT and PilU. Chemical mutagenesis followed by whole-genome sequencing was used to identify suppressors in the Δ pilU mutant background that restored twitching motility. The mutations mapped to the major pilin, PilA, or the pilus tip adhesin, PilY1. Both the position and nature of the substitutions in PilA impacted restoration of motility, and it was dependent on functional PilT. Complementation of most pilU suppressors with PilU in trans further increased motility, while the expression of wild-type PilA in trans decreased motility in a dose-dependent manner. Notably, cAMP levels remained elevated in most twitching pilU suppressor mutants, showing that surface sensing and motility can be uncoupled. Together, our data suggest that the bacterial response to surfaces reflects a complex interaction of PilU function with specific alleles of PilY1 and PilA that together modulate pilus dynamics and function. The ability of bacteria to sense and respond to contact with surfaces is important for triggering changes in secondary messenger levels and gene expression, leading to the formation of biofilms and increased production of virulence factors. For Pseudomonas aeruginosa , the expression of functional type IVa pili is important for the accumulation of cyclic AMP (cAMP) following surface contact. Deletion of the PilT retraction ATPase paralog PilU leads to loss of pilus-mediated twitching motility but also high intracellular levels of cAMP, a phenotype mimicking that of surface-adapted cells. Here, we isolated twitching suppressors of a pilU deletion mutant that mapped to the pilin subunit PilA or pilus-tip adhesin PilY1 and showed that for most, elevated cAMP levels did not decrease when motility was restored. Twitching was dependent on functional PilT, and complementation with PilU further increased twitching for most mutants. These data show that in permissive contexts, PilU is not required for twitching motility, providing new insights into mechanisms of bacterial surface sensing and evolution of type IVa pilus motor function.


  • Organizational Affiliation
    • Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Canada.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PilU protein
A, B, C, D
402Pseudomonas aeruginosaMutation(s): 0 
Gene Names: pilUpilT_1CAZ10_35430IPC1295_09785L4V69_05360PAERUG_P19_London_7_VIM_2_05_10_02116
UniProt
Find proteins for Q51532 (Pseudomonas aeruginosa)
Explore Q51532 
Go to UniProtKB:  Q51532
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ51532
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.54 Å
  • R-Value Free:  0.299 (Depositor), 0.294 (DCC) 
  • R-Value Work:  0.282 (Depositor), 0.280 (DCC) 
  • R-Value Observed: 0.283 (Depositor) 
Space Group: P 21 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 191.035α = 90
b = 191.035β = 90
c = 191.035γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)Canada--

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-10
    Type: Initial release