9N03 | pdb_00009n03

Crystal structure of Melanotaenia fluviatilis estrogen receptor alpha ligand binding domain complexed with Bisphenol AF

PDB DOI: https://doi.org/10.2210/pdb9N03/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Melanotaenia fluviatilis
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2025-01-23 Released: 2026-01-28
Deposition Author(s): Pederick, J.L., Bruning, J.B.
Funding Organization(s): Australian Research Council (ARC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.218 (Depositor), 0.218 (DCC)
R-Value Work:
0.185 (Depositor), 0.185 (DCC)
R-Value Observed:
0.187 (Depositor)

Starting Model: experimental
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Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of Melanotaenia fluviatilis estrogen receptor alpha ligand binding domain complexed with Bisphenol AF

Pederick, J.L., McDougal, D.P., Shearwin-Whyatt, L., Woolman, J.C., Grutzner, F., Bruning, J.B.

To be published.

Macromolecule Content

Total Structure Weight: 58.9 kDa
Atom Count: 4,228
Modeled Residue Count: 480
Deposited Residue Count: 502
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Estrogen receptor	A, B	251	Melanotaenia fluviatilis	Mutation(s): 0 Gene Names: ESR1
UniProt
Find proteins for D6N7U3 (Melanotaenia fluviatilis) Explore D6N7U3 Go to UniProtKB: D6N7U3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	D6N7U3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
0CZ (Subject of Investigation/LOI) Query on 0CZ Download Ideal Coordinates CCD File SDF format, chain J [auth B] SDF format, chain G [auth B] SDF format, chain C [auth A] MOL2 format, chain J [auth B] MOL2 format, chain G [auth B] MOL2 format, chain C [auth A] mmCIF format, chain J [auth B] mmCIF format, chain G [auth B] mmCIF format, chain C [auth A]	C [auth A], G [auth B], J [auth B]	4,4'-(1,1,1,3,3,3-hexafluoropropane-2,2-diyl)diphenol C₁₅ H₁₀ F₆ O₂ ZFVMWEVVKGLCIJ-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain G [auth B] Focus chain J [auth B] Interactions & Density Focus chain C [auth A] Focus chain G [auth B] Focus chain J [auth B]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain I [auth B] SDF format, chain H [auth B] SDF format, chain F [auth A] SDF format, chain E [auth A] SDF format, chain D [auth A] MOL2 format, chain I [auth B] MOL2 format, chain H [auth B] MOL2 format, chain F [auth A] MOL2 format, chain E [auth A] MOL2 format, chain D [auth A] mmCIF format, chain I [auth B] mmCIF format, chain H [auth B] mmCIF format, chain F [auth A] mmCIF format, chain E [auth A] mmCIF format, chain D [auth A]	D [auth A], E [auth A], F [auth A], H [auth B], I [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain H [auth B] Focus chain I [auth B] Interactions & Density Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain H [auth B] Focus chain I [auth B]