9MXF | pdb_00009mxf

GRN-P4A isomer 1, granulin


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Topological isomers of a potent wound healing peptide: Structural insights and implications for bioactivity.

Raffaelli, T.Wilson, D.T.Mobli, M.Smout, M.J.Zhao, G.Takjoo, R.Bansal, P.S.Yu, R.Zhang, Z.Loukas, A.Daly, N.L.

(2025) J Biological Chem 301: 110340-110340

  • DOI: https://doi.org/10.1016/j.jbc.2025.110340
  • Primary Citation of Related Structures:  
    9MXE, 9MXF, 9MXG

  • PubMed Abstract: 

    There are numerous examples of topological isomers in organic chemistry, but such isomers are rare in disulfide-rich peptides. Here we characterise two structurally well-defined topological isomers in a peptide (GRN-P4A) containing the mini-granulin fold. The mini-granulin fold is emerging as an important disulfide-rich structural motif with promising implications for the enhancement of wound healing strategies. The two topological isomers of GRN-P4A have well-defined structures that do not interconvert, and although they have the same disulfide bond connectivity and similar overall structures, they have structural differences related to the first inter-cysteine loop. These structural changes influence the bioactivity as the isomers have significant differences in their cell proliferation activity. Prediction of the structure using AlphaFold3 identified the correct disulfide bond connectivity, but the structure of loop 1 was similar to the less abundant isomer of GRN-P4A and did not indicate topological isomerisation. These topological isomers introduce significant complexity to the understanding of folding mechanisms in this class of peptides, and potentially other disulfide-rich peptides, offering valuable insights for protein design and engineering by presenting a novel topological fold-switching mechanism. Additionally, they hold practical implications for the production of GRN-P4A, given its promising potential as a wound-healing agent.


  • Organizational Affiliation
    • Australian Institute of Tropical Health and Medicine, James Cook University, Cairns, Australia.

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Granulin peptide24Opisthorchis viverriniMutation(s): 1 
UniProt
Find proteins for B8XSI4 (Opisthorchis viverrini)
Explore B8XSI4 
Go to UniProtKB:  B8XSI4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB8XSI4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-06-18
    Type: Initial release
  • Version 1.1: 2025-07-16
    Changes: Database references