9MKB | pdb_00009mkb

Structure of the bacteriophage T4 portal-neck-tail complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

In situ Atomic Structure of Phage T4 Head-Tail Connector Complex Shows Molecular Gates Open for Genome Ejection and DNA Pushed into the Tail Tube

Fokine, A.Zhu, J.Klose, T.Vago, F.Arnaud, C.Wang, Z.Khare, B.Rossmann, M.G.Chen, Z.Sun, L.Fang, Q.Kuhn, R.Rao, V.B.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
gp14, neck protein256Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for P11111 (Enterobacteria phage T4)
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
gp18, tail sheath protein
AC [auth B5],
AE [auth Bx],
AF [auth L3],
AG [auth M4],
AH [auth Nd],
AO [auth b5],
AP [auth cO],
B [auth 1],
BC [auth B6],
BE [auth By],
BF [auth L4],
BG [auth M5],
BH [auth Ne],
BO [auth b6],
BP [auth cP],
C [auth 2],
CC [auth B7],
CE [auth Bz],
CF [auth L5],
CG [auth M6],
CH [auth Nf],
CO [auth b7],
D [auth 3],
DF [auth L6],
DG [auth M7],
DH [auth Ng],
DO [auth b8],
DP [auth dS],
E [auth 4],
EF [auth L7],
EG [auth M8],
EH [auth Nh],
EO [auth b9],
EP [auth dT],
F [auth 5],
FA [auth AK],
FF [auth L8],
FG [auth M9],
FH [auth Ni],
FO [auth bN],
FP [auth dU],
GA [auth AL],
GF [auth L9],
GG [auth MS],
GH [auth Nj],
GO [auth bO],
GP [auth dV],
HA [auth AM],
HF [auth LS],
HG [auth MU],
HH [auth Nx],
HO [auth bP],
HP [auth dW],
IA [auth AN],
IF [auth LU],
IG [auth MV],
IH [auth Nz],
IO [auth bQ],
IP [auth dZ],
JA [auth AO],
JF [auth LV],
JG [auth MW],
JO [auth bR],
KA [auth AP],
KF [auth LW],
KG [auth MX],
KO [auth bY],
LF [auth LX],
LG [auth MY],
ME [auth K0],
MF [auth LY],
MG [auth MZ],
MO [auth cA],
NE [auth K1],
NF [auth LZ],
NG [auth Ma],
NO [auth cB],
OE [auth K2],
OF [auth La],
OG [auth Mb],
OO [auth cC],
PE [auth K3],
PF [auth Lb],
PG [auth Mc],
PO [auth cD],
QE [auth K4],
QF [auth Lc],
QG [auth Md],
QO [auth cE],
RE [auth K5],
RF [auth Ld],
RG [auth Me],
RO [auth cF],
SD [auth Bp],
SE [auth K6],
SF [auth Le],
SG [auth Mx],
SO [auth cG],
TD [auth Bq],
TE [auth K7],
TF [auth Lx],
TG [auth Mz],
TO [auth cH],
UD [auth Br],
UE [auth K8],
UF [auth Lz],
UO [auth cI],
VD [auth Bs],
VE [auth K9],
VG [auth NX],
VO [auth cJ],
WB [auth B1],
WD [auth Bt],
WF [auth M0],
WG [auth NZ],
WO [auth cK],
XB [auth B2],
XD [auth Bu],
XE [auth L0],
XF [auth M1],
XG [auth Na],
XN [auth b0],
XO [auth cL],
Y [auth AD],
YB [auth B3],
YD [auth Bv],
YE [auth L1],
YF [auth M2],
YG [auth Nb],
YN [auth b3],
YO [auth cM],
ZB [auth B4],
ZD [auth Bw],
ZE [auth L2],
ZF [auth M3],
ZG [auth Nc],
ZN [auth b4],
ZO [auth cN]
659Escherichia phage T4Mutation(s): 0 
UniProt
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
gp19, tail tube protein
AA [auth AF],
AD [auth BX],
AI [auth Oo],
AJ [auth Pr],
AK [auth Rt],
AR [auth ht],
BA [auth AG],
BD [auth BY],
BI [auth Op],
BJ [auth Ps],
BR [auth hu],
CA [auth AH],
CD [auth BZ],
CI [auth Oq],
CJ [auth Pt],
CR [auth hv],
DA [auth AI],
DD [auth Ba],
DI [auth Or],
DQ [auth h1],
DR [auth hw],
EA [auth AJ],
ED [auth Bb],
EI [auth Os],
EQ [auth h2],
ER [auth hx],
FD [auth Bc],
FI [auth Ot],
FJ [auth RE],
FQ [auth hI],
FR [auth hy],
FS [auth o],
G [auth 6],
GD [auth Bd],
GJ [auth RF],
GQ [auth hJ],
GR [auth hz],
H [auth 7],
HD [auth Be],
HI [auth PE],
HJ [auth RG],
HQ [auth hK],
I [auth 8],
ID [auth Bf],
II [auth PF],
IJ [auth RH],
IQ [auth hL],
J [auth 9],
JD [auth Bg],
JI [auth PG],
JJ [auth RI],
JQ [auth hM],
KD [auth Bh],
KH [auth OE],
KI [auth PH],
KJ [auth RJ],
KQ [auth hX],
LD [auth Bi],
LH [auth OF],
LI [auth PI],
LJ [auth RK],
LQ [auth he],
MD [auth Bj],
MH [auth OG],
MI [auth PJ],
MJ [auth RL],
MQ [auth hf],
ND [auth Bk],
NH [auth OH],
NI [auth PK],
NJ [auth RM],
NQ [auth hg],
OD [auth Bl],
OH [auth OI],
OI [auth PL],
OJ [auth RN],
OQ [auth hh],
PD [auth Bm],
PH [auth OJ],
PI [auth PM],
PJ [auth RO],
PQ [auth hi],
QD [auth Bn],
QH [auth OK],
QI [auth PN],
QJ [auth RT],
QQ [auth hj],
RD [auth Bo],
RH [auth OL],
RI [auth PO],
RJ [auth Rk],
RQ [auth hk],
SH [auth OM],
SI [auth Pj],
SJ [auth Rl],
SQ [auth hl],
TH [auth ON],
TI [auth Pk],
TJ [auth Rm],
TQ [auth hm],
UH [auth OO],
UI [auth Pl],
UJ [auth Rn],
UQ [auth hn],
V [auth AA],
VH [auth Oj],
VI [auth Pm],
VJ [auth Ro],
VQ [auth ho],
WH [auth Ok],
WI [auth Pn],
WJ [auth Rp],
WQ [auth hp],
XH [auth Ol],
XI [auth Po],
XJ [auth Rq],
XQ [auth hq],
YH [auth Om],
YI [auth Pp],
YJ [auth Rr],
YQ [auth hr],
Z [auth AE],
ZH [auth On],
ZI [auth Pq],
ZJ [auth Rs],
ZQ [auth hs]
163Escherichia phage T4Mutation(s): 0 
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
gpwac, fibritin487Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for P10104 (Enterobacteria phage T4)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
gp20, portal protein524Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for A0A7S9SW10 (Escherichia phage T4)
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
gp23, major capsid protein521Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for P04535 (Enterobacteria phage T4)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
gp13, neck protein309Escherichia phage T4Mutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
gp15, tail terminator protein272Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for A0A7S9XHN5 (Escherichia phage T4)
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
gp3, tube terminator protein176Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for A0A7S9SU76 (Escherichia phage T4)
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Hoc, highly immunogenic outer capsid proteinLA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
376Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for A0A7S9SW08 (Escherichia phage T4)
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Soc, small outer capsid protein80Escherichia phage T4Mutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
gp12, short tail fiber protein527Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for P10930 (Enterobacteria phage T4)
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
gp9, baseplate wedge tail fiber connector288Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for A0A7S9SWG4 (Escherichia phage T4)
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
gp11, baseplate wedge protein219Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for A0A7S9SW18 (Escherichia phage T4)
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
gp10, baseplate wedge protein602Escherichia phage T4Mutation(s): 0 
UniProt
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
gp7, baseplate wedge protein1,032Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for P19061 (Enterobacteria phage T4)
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
gp8, baseplate wedge protein334Escherichia phage T4Mutation(s): 0 
UniProt
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
gp6, baseplate wedge protein660Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for P19060 (Enterobacteria phage T4)
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
gp5, baseplate central spike proteinAQ [auth gH],
YP [auth gE],
ZP [auth gG]
575Escherichia phage T4Mutation(s): 0 
EC: 3.2.1.17
UniProt
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
gp5.4, tip of the central spikeBQ [auth gd]97Escherichia phage T4Mutation(s): 0 
UniProt
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
gp27, baseplate hub proteinIR [auth iC],
JR [auth iD],
KR [auth iF]
391Escherichia phage T4Mutation(s): 0 
UniProt
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
gp29, tape measure proteinMR [auth ja],
NR [auth jb],
OR [auth jc]
590Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for P13337 (Enterobacteria phage T4)
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
gp53, baseplate wedge protein196Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for A0A7S9XI21 (Escherichia phage T4)
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
gp25, baseplate protein132Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for A0A7S9SW44 (Escherichia phage T4)
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
gp48, baseplate protein364Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for A0A7S9SVT9 (Escherichia phage T4)
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
gp54, baseplate protein320Escherichia phage T4Mutation(s): 0 
UniProt
Find proteins for P13341 (Enterobacteria phage T4)
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
unassigned peptide A25Escherichia phage T4Mutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
unassigned peptide BCT [auth sQ],
DT [auth sT],
ET [auth sU]
18Escherichia phage T4Mutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
unassigned peptide CGT [auth tS],
HT [auth tX],
IT [auth tY]
10Escherichia phage T4Mutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
unassigned peptide DKT [auth uR],
LT [auth uV],
MT [auth uW]
7Escherichia phage T4Mutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
unassigned peptide EOT [auth vZ],
PT [auth va],
QT [auth vb]
9Escherichia phage T4Mutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI081726

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-24
    Type: Initial release