Download MendeleyA nucleotide code governs Lis1's ability to relieve dynein autoinhibition
Geohring, I.C., Chai, P., Iyer, B.R.To be published.
9MFY | pdb_00009mfy
Motor domain-Pac1 complex with ADP AAA1 and Apo AAA3 from yeast full-length dynein-1 and Pac1 in 0.1 mM ATP condition
- PDB DOI: https://doi.org/10.2210/pdb9MFY/pdb
- EM Map EMD-48242: EMDB EMDataResource
- Classification: MOTOR PROTEIN
- Organism(s): Saccharomyces cerevisiae
- Expression System: Saccharomyces cerevisiae, Spodoptera frugiperda
- Mutation(s): No
- Deposited: 2024-12-10 Released: 2025-12-17
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.30 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nuclear distribution protein PAC1 | A [auth B] | 494 | Saccharomyces cerevisiae | Mutation(s): 0 Gene Names: PAC1, LIS1, YOR269W |  |
UniProt | |||||
Find proteins for P39946 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P39946 Go to UniProtKB: P39946 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P39946 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dynein heavy chain, cytoplasmic | B [auth A] | 4,092 | Saccharomyces cerevisiae | Mutation(s): 0 Gene Names: DYN1, DHC1, YKR054C |  |
UniProt | |||||
Find proteins for P36022 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36022 Go to UniProtKB: P36022 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P36022 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ATP (Subject of Investigation/LOI) Query on ATP | D [auth A] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N |  | ||
| ADP (Subject of Investigation/LOI) Query on ADP | C [auth A], E [auth A] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N |  | ||
| MG (Subject of Investigation/LOI) Query on MG | F [auth A], G [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.30 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | |
| RECONSTRUCTION | cryoSPARC | 4 |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-12-17 Deposition Author(s): Geohring, I.C., Chai, P., Iyer, B.R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35 GM139483 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35 GM142959 |
Revision History (Full details and data files)
- Version 1.0: 2025-12-17
Type: Initial release
