9MES | pdb_00009mes

NMR strucuture of Dengue Virus 2 capsid protein with the deletion of the intrinsically disordered N-terminal region

PDB DOI: https://doi.org/10.2210/pdb9MES/pdb
BMRB: 51073

Classification: VIRAL PROTEIN
Organism(s): dengue virus type 2
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-12-08 Released: 2025-12-17
Deposition Author(s): Barbosa, G.M., Da Poian, A.T., Almeida, F.C.L.
Funding Organization(s): Brazilian National Council for Scientific and Technological Development (CNPq)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 400
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

The role of the N-terminal intrinsically disordered region of the Dengue virus capsid protein in protecting hydrophobic surfaces from full exposure.

Barbosa, G.M., Da Poian, A.T., Almeida, F.C.L.

To be published.

Macromolecule Content

Total Structure Weight: 19.12 kDa
Atom Count: 1,339
Modeled Residue Count: 164
Deposited Residue Count: 164
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein C	A, B	82	dengue virus type 2	Mutation(s): 0
UniProt
Find proteins for P07564 (Dengue virus type 2 (strain Jamaica/1409/1983)) Explore P07564 Go to UniProtKB: P07564
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P07564
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 400
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-12-17

Deposition Author(s):

Almeida, F.C.L.

Funding Organization	Location	Grant Number
Brazilian National Council for Scientific and Technological Development (CNPq)	Brazil	313517/2021-5
Brazilian National Council for Scientific and Technological Development (CNPq)	Brazil	312650/2021-3

Revision History (Full details and data files)

Version 1.0: 2025-12-17
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.