9M8O | pdb_00009m8o

Cryo-EM structure of bacteriophage NF5 baseplate

• PDB DOI: https://doi.org/10.2210/pdb9M8O/pdb
• EM Map EMD-63716: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): Brochothrix phage NF5
• Mutation(s): No 


• Deposited: 2025-03-12 Released: 2025-12-17 
• Deposition Author(s): Peng, Y.N., Liu, H.R.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.44 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

structure of bacteriophage NF5

Peng, Y.N., Liu, H.R.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Hetero 33-mer - A12B6C6D6E3 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 1,763.42 kDa 
• Atom Count: 40,205 
• Modeled Residue Count: 5,070 
• Deposited Residue Count: 16,068 
• Unique protein chains: 4

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gp11	A, B, C, D, E, F	169	Brochothrix phage NF5	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Gp15	G, H, I, J, K, L	255	Brochothrix phage NF5	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Gp14	M, N, O	674	Brochothrix phage NF5	Mutation(s): 0

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Gp18	AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], FA [auth f], GA [auth g], P, Q, R, S, T, U, V, W, X, Y, Z	639	Brochothrix phage NF5	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.44 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.19.2_4158

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-12-17 
Deposition Author(s): Peng, Y.N., Liu, H.R.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	12034006
National Natural Science Foundation of China (NSFC)	China	32430020
National Natural Science Foundation of China (NSFC)	China	32071209

Revision History  

• Version 1.0: 2025-12-17
  Type: Initial release