9LR9 | pdb_00009lr9

Local reconstruction of bovine adenovirus type 3 capsid

  • Classification: VIRAL PROTEIN
  • Organism(s): Bovine adenovirus 3
  • Mutation(s): No 

  • Deposited: 2025-01-30 Released: 2025-06-04 
  • Deposition Author(s): Xiao, H., Liu, H.R.
  • Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural Insights into Minor and Core Proteins of Bovine Adenovirus 3: Bridging Capsid and Genomic Core.

Xiao, H.Pang, H.Zhou, J.Feng, H.Song, J.Cheng, L.Wang, L.Liu, H.

(2025) J Mol Biology 437: 169208-169208

  • DOI: https://doi.org/10.1016/j.jmb.2025.169208
  • Primary Citation of Related Structures:  
    9LR9

  • PubMed Abstract: 

    Adenoviruses are double-stranded DNA viruses with broad relevance to human and animal health and considerable potential as therapeutic vectors. Despite extensive studies, the structural details of core and minor capsid proteins in adenoviruses remain poorly understood. In this study, the architecture of bovine adenovirus type 3 (BAdV-3), a member of the Mastadenovirus genus, was solved by cryo-electron microscopy. Our structure shows that BAdV-3 shares significant structural conservation with human adenoviruses. Atomic models were constructed for a previously uncharacterized region of the minor protein VI and for the core proteins V and Mu. The study revealed how core proteins bridge the genome and capsid, underscore the multifaceted roles of protein V in strengthening capsid stability and facilitating genome release.


  • Organizational Affiliation
    • Institute of Interdisciplinary Studies, Key Laboratory for Matter Microstructure and Function of Hunan Province, Key Laboratory of Low-dimensional Quantum Structures and Quantum Control, School of Physics and Electronics, Hunan Normal University, Changsha 410081, China; College of Life Sciences, Hunan Normal University, Changsha 410081, China.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Hexon protein911Bovine adenovirus 3Mutation(s): 0 
UniProt
Find proteins for P03278 (Bovine adenovirus B serotype 3)
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UniProt GroupP03278
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
PVI263Bovine adenovirus 3Mutation(s): 0 
UniProt
Find proteins for A0A9W3HR60 (Bovine adenovirus B serotype 3)
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UniProt GroupA0A9W3HR60
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Pre-histone-like nucleoproteinC,
DA [auth e],
EA [auth f],
U
171Bovine adenovirus 3Mutation(s): 0 
UniProt
Find proteins for A0A9W3HR39 (Bovine adenovirus B serotype 3)
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UniProt GroupA0A9W3HR39
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
PX80Bovine adenovirus 3Mutation(s): 0 
UniProt
Find proteins for A0A9W3N2I0 (Bovine adenovirus B serotype 3)
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UniProt GroupA0A9W3N2I0
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Pre-hexon-linking protein IIIa568Bovine adenovirus 3Mutation(s): 0 
UniProt
Find proteins for A0A9W3HR52 (Bovine adenovirus B serotype 3)
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
PV410Bovine adenovirus 3Mutation(s): 0 
UniProt
Find proteins for A0A9W3N256 (Bovine adenovirus B serotype 3)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Pre-hexon-linking protein VIII
N, R
216Bovine adenovirus 3Mutation(s): 0 
UniProt
Find proteins for Q03556 (Bovine adenovirus B serotype 3)
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UniProt GroupQ03556
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
PIX
O, P, Q, V
125Bovine adenovirus 3Mutation(s): 0 
UniProt
Find proteins for Q64845 (Bovine adenovirus B serotype 3)
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UniProt GroupQ64845
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Penton proteinIA [auth j]482Bovine adenovirus 3Mutation(s): 0 
UniProt
Find proteins for A0A9W3HR47 (Bovine adenovirus B serotype 3)
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UniProt GroupA0A9W3HR47
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China12034006
National Natural Science Foundation of China (NSFC)China32430020
National Natural Science Foundation of China (NSFC)China32371263
National Natural Science Foundation of China (NSFC)China32401014

Revision History  (Full details and data files)

  • Version 1.0: 2025-06-04
    Type: Initial release
  • Version 1.1: 2025-06-11
    Changes: Data collection, Database references