9LB5 | pdb_00009lb5

mutant S483T/G490N/V492M/S497T/A599G of HEV-1 E2s domain

PDB DOI: https://doi.org/10.2210/pdb9LB5/pdb

Classification: VIRAL PROTEIN
Organism(s): Escherichia, Hepatitis E virus (strain Burma)
Expression System: Escherichia
Mutation(s): Yes

Deposited: 2025-01-03 Released: 2026-01-14
Deposition Author(s): Zimin, T., Guiping, W., Hai, Y., Qing, Z., Zizheng, Z., Ningshao, X., Shaowei, L.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.35 Å
R-Value Free:
0.154 (Depositor), 0.152 (DCC)
R-Value Work:
0.139 (Depositor), 0.141 (DCC)
R-Value Observed:
0.149 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Critical Role of Asn490 and Met492 on Capsid Protein of Zoonotic Group HEV in Host Tropism from Swine to Human

Zimin, T., Hai, Y., Guiping, W., Chang, L., Zihao, Y., Junfei, L., Siling, W., Dong, Y., Mujin, F., Yingbin, W., Ying, G., Jun, Z., Shaowei, L., Qingbing, Z., Ningshao, X., Zizheng, Z.

To be published.

Macromolecule Content

Total Structure Weight: 64.24 kDa
Atom Count: 5,360
Modeled Residue Count: 589
Deposited Residue Count: 592
Unique protein chains: 3

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Secreted protein ORF2	A, C	148	Escherichia	Mutation(s): 5 Gene Names: 31767
UniProt
Find proteins for P29326 (Hepatitis E virus genotype 1 (isolate Human/Burma)) Explore P29326 Go to UniProtKB: P29326
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P29326
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Secreted protein ORF2	B	148	Hepatitis E virus (strain Burma)	Mutation(s): 5 Gene Names: ORF2
UniProt
Find proteins for P29326 (Hepatitis E virus genotype 1 (isolate Human/Burma)) Explore P29326 Go to UniProtKB: P29326
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P29326
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Secreted protein ORF2	D	148	Hepatitis E virus (strain Burma)	Mutation(s): 5 Gene Names: ORF2
UniProt
Find proteins for P29326 (Hepatitis E virus genotype 1 (isolate Human/Burma)) Explore P29326 Go to UniProtKB: P29326
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P29326
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain H [auth B] SDF format, chain I [auth C] SDF format, chain J [auth C] SDF format, chain K [auth D] SDF format, chain L [auth D] SDF format, chain M [auth D] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth B] MOL2 format, chain I [auth C] MOL2 format, chain J [auth C] MOL2 format, chain K [auth D] MOL2 format, chain L [auth D] MOL2 format, chain M [auth D] mmCIF format, chain E [auth A] mmCIF format, chain F [auth A] mmCIF format, chain G [auth A] mmCIF format, chain H [auth B] mmCIF format, chain I [auth C] mmCIF format, chain J [auth C] mmCIF format, chain K [auth D] mmCIF format, chain L [auth D] mmCIF format, chain M [auth D]	E [auth A] F [auth A] G [auth A] H [auth B] I [auth C] E [auth A], F [auth A], G [auth A], H [auth B], I [auth C], J [auth C], K [auth D], L [auth D], M [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth B] Focus chain I [auth C] Focus chain J [auth C] Focus chain K [auth D] Focus chain L [auth D] Focus chain M [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth B] Focus chain I [auth C] Focus chain J [auth C] Focus chain K [auth D] Focus chain L [auth D] Focus chain M [auth D]