9L8P | pdb_00009l8p

in situ structure of mtHsp60-Hsp10

  • Classification: CHAPERONE
  • Organism(s): Homo sapiens
  • Mutation(s): No 

  • Deposited: 2024-12-27 Released: 2025-10-01 
  • Deposition Author(s): Jung, M., Roh, S.
  • Funding Organization(s): National Research Foundation (NRF, Korea)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.30 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

In situ characterization of mitochondrial Hsp60-Hsp10 chaperone complex under folding stress.

Jung, M.Kim, M.Ham, S.J.Chung, J.Roh, S.H.

(2025) Sci Adv 11: eadw6064-eadw6064

  • DOI: https://doi.org/10.1126/sciadv.adw6064
  • Primary Citation of Related Structures:  
    9L8P

  • PubMed Abstract: 

    Mitochondrial proteostasis is critical for maintaining mitochondrial function, and its disruption induces mitochondrial unfolded protein response, which up-regulates chaperones to alleviate protein-folding stress. However, how these chaperones mitigate protein-folding stress remains unclear. Here, using correlated cryo-electron tomography, we show that folding stress triggers marked mitochondrial morphological changes, including the accumulation of amorphous protein aggregates and increased abundance and spatial clustering of the mitochondrial heat shock protein 60-heat shock protein 10 (mtHsp60-Hsp10) complex. Subtomogram analysis revealed the in situ architecture and conformational heterogeneity of mtHsp60-Hsp10 under stress, which retains its canonical double-ring structure while adopting distinct football, half-football, and bullet-like states. Notably, the mtHsp60-Hsp10 complex encapsulates unstructured substrates through conserved hydrophobic interactions. We further demonstrate that knockdown of the mtHsp60-Hsp10 complex exacerbates folding stress, as evidenced by elevated cellular stress responses and activation of mitophagy. Our study defines the in situ structural properties of the mtHsp60-Hsp10 complex and provides mechanistic insight into how it safeguards mitochondrial proteostasis under folding stress.


  • Organizational Affiliation
    • School of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
60 kDa heat shock protein, mitochondrial573Homo sapiensMutation(s): 0 
EC: 5.6.1.7
UniProt & NIH Common Fund Data Resources
Find proteins for P10809 (Homo sapiens)
Explore P10809 
Go to UniProtKB:  P10809
PHAROS:  P10809
GTEx:  ENSG00000144381 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP10809
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
10 kDa heat shock protein, mitochondrial102Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P61604 (Homo sapiens)
Explore P61604 
Go to UniProtKB:  P61604
PHAROS:  P61604
GTEx:  ENSG00000115541 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP61604
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ATP (Subject of Investigation/LOI)
Query on ATP

Download Ideal Coordinates CCD File 
AB [auth L]
CA [auth A]
CB [auth K]
EA [auth G]
GA [auth F]
AB [auth L],
CA [auth A],
CB [auth K],
EA [auth G],
GA [auth F],
IA [auth E],
KA [auth D],
MA [auth C],
OA [auth B],
QA [auth J],
SA [auth I],
UA [auth H],
WA [auth N],
YA [auth Y]
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
K (Subject of Investigation/LOI)
Query on K

Download Ideal Coordinates CCD File 
BB [auth L]
DA [auth A]
DB [auth K]
FA [auth G]
HA [auth F]
BB [auth L],
DA [auth A],
DB [auth K],
FA [auth G],
HA [auth F],
JA [auth E],
LA [auth D],
NA [auth C],
PA [auth B],
RA [auth J],
TA [auth I],
VA [auth H],
XA [auth N],
ZA [auth Y]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.30 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of2019R1C1C1004598
National Research Foundation (NRF, Korea)Korea, Republic Of2020R1A5A1018081
National Research Foundation (NRF, Korea)Korea, Republic Of2021M3A9I4021220
National Research Foundation (NRF, Korea)Korea, Republic Of2019M3E5D6063871
National Research Foundation (NRF, Korea)Korea, Republic Of2020R1A6C101A183

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-01
    Type: Initial release
  • Version 1.1: 2025-10-15
    Changes: Database references
  • Version 1.2: 2025-11-19
    Changes: Database references