9KKL | pdb_00009kkl

Structural Basis for the Recognition of Blood Group Trisaccharides by Tulane virus

PDB DOI: https://doi.org/10.2210/pdb9KKL/pdb
EM Map EMD-62391: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Rhesus macaque recovirus
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2024-11-13 Released: 2025-11-19
Deposition Author(s): Qian, Y., Cong, J., Li, X., Chen, Y.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.60 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9KKL

This is version 1.0 of the entry. See complete history.

Literature

Structural Basis for the Recognition of Blood Group Trisaccharides by Tulane virus

Ying, Q., Jingyuan, C., Xuemei, L., Chen, Y.

To be published.

Macromolecule Content

Total Structure Weight: 116.55 kDa
Atom Count: 4,700
Modeled Residue Count: 606
Deposited Residue Count: 1,070
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein	A [auth B], B [auth A]	535	Rhesus macaque recovirus	Mutation(s): 0
UniProt
Find proteins for A0A067YMZ3 (Rhesus macaque recovirus) Explore A0A067YMZ3 Go to UniProtKB: A0A067YMZ3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A067YMZ3
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose	C, D	3		N/A	Interactions Focus chain C Focus chain D Interactions & Density Focus chain C Focus chain D
Glycosylation Resources
GlyTouCan: G15611BA GlyCosmos: G15611BA GlyGen: G15611BA

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.60 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX
RECONSTRUCTION	RELION

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-11-19

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2025-11-19
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.