9K7Z | pdb_00009k7z

Cryo-EM structure of designed zinc-induced icosahedron Cage-i53-Zn1-HEHE-16

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.65 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9K7Z

This is version 1.0 of the entry. See complete history. 

Literature

De novo design of metal ion regulated protein assemblies

Qu, Y.N., Cao, L.X.

To be published.

Macromolecule Content 

  • Total Structure Weight: 1,796.43 kDa 
  • Atom Count: 114,900 
  • Modeled Residue Count: 14,040 
  • Deposited Residue Count: 15,480 
  • Unique protein chains: 1

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
(Subject of Investigation/LOI)

Query on ZN


Download:Ideal Coordinates CCD File
AC [auth m]
AD [auth e]
AE [auth L]
AF [auth u]
BC [auth x]
AC [auth m],
AD [auth e],
AE [auth L],
AF [auth u],
BC [auth x],
BD [auth e],
BE [auth L],
BF [auth 5],
CC [auth G],
CD [auth p],
CE [auth W],
CF [auth 5],
DC [auth G],
DD [auth 0],
DE [auth W],
DF [auth 5],
EC [auth G],
ED [auth 0],
EE [auth h],
EF [auth O],
FC [auth R],
FD [auth 0],
FE [auth h],
FF [auth O],
GC [auth R],
GD [auth J],
GE [auth s],
GF [auth Z],
HC [auth c],
HD [auth J],
HE [auth 3],
HF [auth Z],
IB [auth A],
IC [auth c],
ID [auth U],
IE [auth 3],
IF [auth k],
JB [auth A],
JC [auth n],
JD [auth U],
JE [auth 3],
JF [auth k],
KB [auth A],
KC [auth n],
KD [auth f],
KE [auth M],
KF [auth v],
LB [auth B],
LC [auth y],
LD [auth f],
LE [auth M],
LF [auth 6],
MB [auth B],
MC [auth H],
MD [auth q],
ME [auth X],
MF [auth 6],
NB [auth C],
NC [auth H],
ND [auth 1],
NE [auth X],
NF [auth 6],
OB [auth C],
OC [auth H],
OD [auth 1],
OE [auth i],
OF [auth P],
PB [auth D],
PC [auth S],
PD [auth 1],
PE [auth i],
PF [auth P],
QB [auth D],
QC [auth S],
QD [auth K],
QE [auth t],
QF [auth a],
RB [auth E],
RC [auth d],
RD [auth K],
RE [auth 4],
RF [auth a],
SB [auth F],
SC [auth d],
SD [auth V],
SE [auth 4],
SF [auth l],
TB [auth F],
TC [auth o],
TD [auth V],
TE [auth 4],
TF [auth l],
UB [auth F],
UC [auth o],
UD [auth g],
UE [auth N],
UF [auth w],
VB [auth Q],
VC [auth z],
VD [auth g],
VE [auth N],
VF [auth 7],
WB [auth Q],
WC [auth I],
WD [auth r],
WE [auth Y],
WF [auth 7],
XB [auth b],
XC [auth I],
XD [auth 2],
XE [auth Y],
XF [auth 7],
YB [auth b],
YC [auth T],
YD [auth 2],
YE [auth j],
ZB [auth m],
ZC [auth T],
ZD [auth 2],
ZE [auth j]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.65 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China--

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-29
    Type: Initial release