9JY1 | pdb_00009jy1

delta epsilon/delta epsilon Fab-TCR tetramer

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.08 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Structures of the apo and agonist-crosslinked human gamma delta T-cell receptor

Wang, L., Li, Z., Fan, Y., Li, J.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Fab heavy chainA [auth P],
K [auth R]		222Homo sapiensMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Fab light chainB [auth O],
L [auth Q]		212Homo sapiensMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
T-cell surface glycoprotein CD3 zeta chainC [auth a],
D [auth b],
M [auth A],
N [auth B]		166Homo sapiensMutation(s): 0 
Gene Names: CD247, CD3Z, T3Z, TCRZ
UniProt & NIH Common Fund Data Resources
Find proteins for P20963 (Homo sapiens)
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PHAROS:  P20963
GTEx:  ENSG00000198821 
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UniProt GroupP20963
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
T-cell surface glycoprotein CD3 delta chainE [auth d],
O [auth D]		171Homo sapiensMutation(s): 0 
Gene Names: CD3D, T3D
UniProt & NIH Common Fund Data Resources
Find proteins for P04234 (Homo sapiens)
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PHAROS:  P04234
GTEx:  ENSG00000167286 
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UniProt GroupP04234
Glycosylation
Glycosylation Sites: 2
Go to GlyGen: P04234-1
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
T-cell surface glycoprotein CD3 epsilon chainF [auth e],
G [auth f],
P [auth E],
Q [auth F]		207Homo sapiensMutation(s): 0 
Gene Names: CD3E, T3E
UniProt & NIH Common Fund Data Resources
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PHAROS:  P07766
GTEx:  ENSG00000198851 
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UniProt GroupP07766
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
T-cell surface glycoprotein CD3 gamma chainH [auth g],
R [auth G]		182Homo sapiensMutation(s): 0 
Gene Names: CD3G, T3G
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PHAROS:  P09693
GTEx:  ENSG00000160654 
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UniProt GroupP09693
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
T cell receptor delta variable 2,T cell receptor delta constantI [auth m],
S [auth M]		292Homo sapiensMutation(s): 0 
Gene Names: TRDV2, hDV102S1, TRDC
UniProt
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UniProt GroupB7Z8B9
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
T cell receptor gamma variable 9,T cell receptor gamma constant 1J [auth n],
T [auth N]		315Homo sapiensMutation(s): 0 
Gene Names: TRGV9, TCRGV9, TRGC1, TCRGC1
UniProt & NIH Common Fund Data Resources
Find proteins for P0CF51 (Homo sapiens)
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Find proteins for Q99603 (Homo sapiens)
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GTEx:  ENSG00000211695 
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UniProt GroupsQ99603P0CF51
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.08 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-22
    Type: Initial release
  • Version 1.1: 2025-11-05
    Changes: Data collection, Database references, Source and taxonomy, Structure summary