9JP0 | pdb_00009jp0

the wild-type human PRMT1 filament

PDB DOI: https://doi.org/10.2210/pdb9JP0/pdb
EM Map EMD-61691: EMDB EMDataResource

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-09-25 Released: 2025-07-16
Deposition Author(s): Li, Y.W., Ru, Y.X.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9JP0

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of the human PRMT1 filament

Li, Y.W., Ru, Y.X.

To be published.

Macromolecule Content

Total Structure Weight: 425.12 kDa
Atom Count: 25,322
Modeled Residue Count: 3,120
Deposited Residue Count: 3,710
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein arginine N-methyltransferase 1	A [auth E] B C D [auth F] E [auth G] A [auth E], B, C, D [auth F], E [auth G], F [auth H], G [auth D], H [auth A], I, J	371	Homo sapiens	Mutation(s): 0 Gene Names: PRMT1, HMT2, HRMT1L2, IR1B4 EC: 2.1.1.319
UniProt & NIH Common Fund Data Resources
Find proteins for Q99873 (Homo sapiens) Explore Q99873 Go to UniProtKB: Q99873
PHAROS: Q99873 GTEx: ENSG00000126457
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q99873
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX
RECONSTRUCTION	RELION

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-07-16

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	China	K22227503

Revision History (Full details and data files)

Version 1.0: 2025-07-16
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.