9JJ8 | pdb_00009jj8

Structural insights into the PSI-FCPI supercomplex from the coccolithophore Emiliania huxleyi

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.79 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history. 


Literature

Structural insights into the PSI-FCPI supercomplex from the coccolithophore Emiliania huxleyi

Shen, L.L., Li, Z.H., Wang, W.D.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I P700 chlorophyll a apoprotein A1A [auth a]752Emiliania huxleyi CCMP1516Mutation(s): 0 
EC: 1.97.1.12
UniProt
Find proteins for Q4G3F6 (Emiliania huxleyi)
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I P700 chlorophyll a apoprotein A2B [auth b]734Emiliania huxleyi CCMP1516Mutation(s): 0 
EC: 1.97.1.12
UniProt
Find proteins for Q4G3F5 (Emiliania huxleyi)
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I iron-sulfur centerC [auth c]81Emiliania huxleyi CCMP1516Mutation(s): 0 
EC: 1.97.1.12
UniProt
Find proteins for Q4G3C1 (Emiliania huxleyi)
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IID [auth d]142Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for Q4G369 (Emiliania huxleyi)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IVE [auth e]131Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1EZZ6 (Emiliania huxleyi)
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IIIF [auth f]184Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for Q4G3B9 (Emiliania huxleyi)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit VIIIG [auth i]36Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IXH [auth j]40Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit XII [auth l]145Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit XIIJ [auth m]30Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
PSI-KK [auth k]145Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for A0A7S3X4W4 (Emiliania huxleyi)
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Linker-proteinL [auth o]123Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1DLA7 (Emiliania huxleyi)
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinM [auth A]201Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1FED1 (Emiliania huxleyi)
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinN [auth B]177Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1D5F1 (Emiliania huxleyi)
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinO [auth C]233Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for A0A6V2SE28 (Emiliania huxleyi)
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinP [auth D]231Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1ESZ0 (Emiliania huxleyi)
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinQ [auth E]217Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1DEA6 (Emiliania huxleyi)
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinR [auth F]239Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1DWS2 (Emiliania huxleyi)
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinS [auth G]204Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinT [auth H]210Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for A0A7S3WIW7 (Emiliania huxleyi)
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinU [auth J]251Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for A0A7S3TG01 (Emiliania huxleyi)
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinV [auth K]198Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1DY94 (Emiliania huxleyi)
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinW [auth L]244Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1FP66 (Emiliania huxleyi)
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinGA [auth W],
X [auth M],
Z [auth P]		224Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinY [auth O]219Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for A0A7S3WZA0 (Emiliania huxleyi)
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinAA [auth Q]257Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1EB65 (Emiliania huxleyi)
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinBA [auth R],
FA [auth V],
HA [auth X],
MA [auth 5]		219Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1DCN2 (Emiliania huxleyi)
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting protein255Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1EIA6 (Emiliania huxleyi)
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinDA [auth T]211Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1DMQ2 (Emiliania huxleyi)
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinEA [auth U]198Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1ED82 (Emiliania huxleyi)
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinIA [auth 0]254Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1CV07 (Emiliania huxleyi)
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinJA [auth 1]253Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1CMT6 (Emiliania huxleyi)
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinKA [auth 3]268Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1DAV6 (Emiliania huxleyi)
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinOA [auth 8],
YA [auth 6]		250Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1FP66 (Emiliania huxleyi)
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinPA [auth 9]245Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1DNR0 (Emiliania huxleyi)
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinQA [auth I]209Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for A0A7S3TFW5 (Emiliania huxleyi)
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
PsaRRA [auth h]133Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1BKA6 (Emiliania huxleyi)
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
Light harvesting proteinVA [auth Y],
WA [auth Z],
XA [auth 2]		260Emiliania huxleyi CCMP1516Mutation(s): 0 
UniProt
Find proteins for R1CGG7 (Emiliania huxleyi)
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Small Molecules
Ligands 14 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
DGD (Subject of Investigation/LOI)
Query on DGD
Download Ideal Coordinates CCD File 
NH [auth C],
QE [auth b]		DIGALACTOSYL DIACYL GLYCEROL (DGDG)
C51 H96 O15
LDQFLSUQYHBXSX-HXXRYREZSA-N
CLA (Subject of Investigation/LOI)
Query on CLA
Download Ideal Coordinates CCD File 
AAA [auth 5]
AB [auth a]
ABA [auth 7]
AC [auth a]
AD [auth b]
AAA [auth 5],
AB [auth a],
ABA [auth 7],
AC [auth a],
AD [auth b],
AE [auth b],
AG [auth o],
AGA [auth Y],
AI [auth D],
AIA [auth 6],
AJ [auth E],
AL [auth H],
AM [auth J],
AO [auth M],
AQ [auth Q],
AS [auth S],
AX [auth 1],
BAA [auth 5],
BB [auth a],
BC [auth a],
BD [auth b],
BE [auth b],
BEA [auth x],
BF [auth i],
BGA [auth Y],
BHA [auth 2],
BI [auth D],
BJ [auth E],
BN [auth L],
BO [auth M],
BQ [auth Q],
BX [auth 1],
BY [auth 3],
CB [auth a],
CC [auth a],
CD [auth b],
CDA [auth I],
CE [auth b],
CF [auth j],
CHA [auth 2],
CI [auth D],
CIA [auth 6],
CJ [auth E],
CL [auth H],
CQ [auth Q],
CU [auth V],
CX [auth 1],
CZ [auth 4],
DB [auth a],
DC [auth a],
DD [auth b],
DDA [auth I],
DE [auth b],
DGA [auth Y],
DH [auth C],
DHA [auth 2],
DI [auth D],
DL [auth H],
DQ [auth Q],
DR [auth R],
DW [auth 0],
EB [auth a],
EC [auth a],
ED [auth b],
EDA [auth I],
EE [auth b],
EEA [auth x],
EFA [auth z],
EGA [auth Y],
EH [auth C],
EHA [auth 2],
EI [auth D],
EN [auth L],
EO [auth M],
EP [auth P],
ER [auth R],
ET [auth U],
EW [auth 0],
EX [auth 1],
EY [auth 3],
FB [auth a],
FC [auth a],
FCA [auth 9],
FD [auth b],
FDA [auth I],
FE [auth b],
FEA [auth x],
FFA [auth z],
FG [auth A],
FH [auth C],
FI [auth D],
FIA [auth 6],
FL [auth H],
FP [auth P],
FQ [auth Q],
FT [auth U],
FU [auth V],
FW [auth 0],
FY [auth 3],
FZ [auth 4],
GB [auth a],
GC [auth a],
GCA [auth 9],
GD [auth b],
GE [auth b],
GF [auth l],
GFA [auth z],
GG [auth A],
GH [auth C],
GHA [auth 2],
GI [auth D],
GL [auth H],
GM [auth K],
GP [auth P],
GT [auth U],
GW [auth 0],
GZ [auth 4],
HB [auth a],
HC [auth a],
HCA [auth 9],
HD [auth b],
HDA [auth I],
HE [auth b],
HFA [auth z],
HG [auth A],
HH [auth C],
HK [auth G],
HM [auth K],
HN [auth L],
HT [auth U],
HX [auth 1],
HY [auth 3],
IB [auth a],
IC [auth a],
ICA [auth 9],
ID [auth b],
IDA [auth I],
IE [auth b],
IF [auth l],
IG [auth A],
IGA [auth Z],
IH [auth C],
IIA [auth 6],
IK [auth G],
IM [auth K],
IN [auth L],
IP [auth P],
IQ [auth Q],
IT [auth U],
IV [auth X],
IW [auth 0],
IX [auth 1],
IY [auth 3],
JB [auth a],
JC [auth a],
JD [auth b],
JDA [auth I],
JE [auth b],
JF [auth l],
JFA [auth z],
JG [auth A],
JGA [auth Z],
JH [auth C],
JHA [auth 2],
JIA [auth 6],
JJ [auth F],
JM [auth K],
JT [auth U],
JV [auth X],
KB [auth a],
KC [auth a],
KCA [auth 9],
KD [auth b],
KDA [auth I],
KF [auth l],
KGA [auth Z],
KH [auth C],
KHA [auth 2],
KK [auth G],
KS [auth T],
KT [auth U],
KV [auth X],
KX [auth 1],
LB [auth a],
LBA [auth 8],
LD [auth b],
LDA [auth h],
LG [auth A],
LGA [auth Z],
LJ [auth F],
LM [auth K],
LP [auth P],
LQ [auth Q],
LS [auth T],
LT [auth U],
LW [auth 0],
LX [auth 1],
MB [auth a],
MBA [auth 8],
MD [auth b],
MEA [auth y],
MFA [auth z],
MG [auth A],
MHA [auth 2],
MJ [auth F],
MK [auth G],
MM [auth K],
MQ [auth Q],
MS [auth T],
MT [auth U],
MV [auth X],
NB [auth a],
NBA [auth 8],
NCA [auth 9],
ND [auth b],
NEA [auth y],
NGA [auth Z],
NHA [auth 2],
NJ [auth F],
NO [auth O],
NP [auth P],
NS [auth T],
NW [auth 0],
OAA [auth 7],
OB [auth a],
OBA [auth 8],
OD [auth b],
OEA [auth y],
OG [auth A],
OM [auth K],
OO [auth O],
OR [auth S],
PAA [auth 7],
PB [auth a],
PD [auth b],
PEA [auth y],
PF [auth k],
PFA [auth z],
PG [auth A],
PI [auth E],
PJ [auth F],
PL [auth J],
PO [auth O],
PR [auth S],
PS [auth T],
PU [auth W],
PW [auth 0],
QAA [auth 7],
QB [auth a],
QBA [auth 8],
QD [auth b],
QF [auth k],
QFA [auth z],
QGA [auth Z],
QI [auth E],
QJ [auth F],
QK [auth G],
QL [auth J],
QO [auth O],
QR [auth S],
QU [auth W],
QW [auth 0],
RAA [auth 7],
RB [auth a],
RCA [auth 9],
RD [auth b],
REA [auth y],
RF [auth k],
RGA [auth Z],
RI [auth E],
RJ [auth F],
RL [auth J],
RN [auth M],
RO [auth O],
RR [auth S],
RU [auth W],
RV [auth X],
RZ [auth 5],
SB [auth a],
SCA [auth 9],
SD [auth b],
SE [auth b],
SFA [auth Y],
SI [auth E],
SJ [auth F],
SL [auth J],
SN [auth M],
SO [auth O],
SV [auth X],
SZ [auth 5],
TAA [auth 7],
TB [auth a],
TBA [auth 8],
TC [auth a],
TD [auth b],
TDA [auth x],
TFA [auth Y],
TG [auth B],
TGA [auth Z],
TI [auth E],
TJ [auth F],
TL [auth J],
TN [auth M],
TO [auth O],
TR [auth S],
TU [auth W],
TZ [auth 5],
UB [auth a],
UC [auth b],
UD [auth b],
UDA [auth x],
UEA [auth y],
UFA [auth Y],
UG [auth B],
UGA [auth Z],
UL [auth J],
US [auth T],
UY [auth 4],
VB [auth a],
VC [auth b],
VCA [auth I],
VD [auth b],
VDA [auth x],
VF [auth o],
VFA [auth Y],
VG [auth B],
VI [auth E],
VL [auth J],
VN [auth M],
VO [auth O],
VQ [auth R],
VS [auth T],
VT [auth V],
VY [auth 4],
VZ [auth 5],
WAA [auth 7],
WB [auth a],
WBA [auth 8],
WC [auth b],
WD [auth b],
WDA [auth x],
WE [auth f],
WF [auth o],
WG [auth B],
WH [auth D],
WI [auth E],
WK [auth H],
WL [auth J],
WM [auth L],
WQ [auth R],
WR [auth S],
WS [auth T],
WT [auth V],
WU [auth W],
WX [auth 3],
WY [auth 4],
XB [auth a],
XBA [auth 8],
XD [auth b],
XE [auth f],
XEA [auth y],
XF [auth o],
XFA [auth Y],
XG [auth B],
XH [auth D],
XHA [auth 6],
XI [auth E],
XK [auth H],
XM [auth L],
XO [auth O],
XQ [auth R],
XT [auth V],
XX [auth 3],
XY [auth 4],
YB [auth a],
YC [auth b],
YD [auth b],
YDA [auth x],
YEA [auth y],
YH [auth D],
YHA [auth 6],
YI [auth E],
YJ [auth F],
YK [auth H],
YL [auth J],
YM [auth L],
YN [auth M],
YS [auth U],
YU [auth W],
YX [auth 3],
ZA [auth a],
ZAA [auth 7],
ZB [auth a],
ZC [auth b],
ZD [auth b],
ZE [auth i],
ZF [auth o],
ZG [auth B],
ZH [auth D],
ZHA [auth 6],
ZI [auth E],
ZK [auth H],
ZL [auth J],
ZM [auth L],
ZQ [auth R],
ZR [auth S],
ZT [auth V],
ZU [auth W],
ZW [auth 1],
ZX [auth 3],
ZY [auth 4]
CHLOROPHYLL A
C55 H72 Mg N4 O5
ATNHDLDRLWWWCB-AENOIHSZSA-M
A1EB4 (Subject of Investigation/LOI)
Query on A1EB4
Download Ideal Coordinates CCD File 
BV [auth W]
CP [auth P]
FO [auth M]
GS [auth T]
GV [auth X]
BV [auth W],
CP [auth P],
FO [auth M],
GS [auth T],
GV [auth X],
MU [auth W],
ON [auth M],
PP [auth P],
PZ [auth 5],
QP [auth P],
TQ [auth R]
[(2~{Z},4~{E},6~{E},8~{E},10~{E},12~{E},14~{E})-17-[(4~{S},6~{R})-4-acetyloxy-2,2,6-trimethyl-6-oxidanyl-cyclohexylidene]-6,11,15-trimethyl-2-[2-[(1~{R},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethynyl]heptadeca-2,4,6,8,10,12,14,16-octaenyl] dodecanoate
C54 H78 O7
ACBKTNCIIMHQPA-QPPVEKCASA-N
SQD (Subject of Investigation/LOI)
Query on SQD
Download Ideal Coordinates CCD File 
DAA [auth 7]
DJ [auth E]
HI [auth D]
HR [auth S]
HU [auth W]
DAA [auth 7],
DJ [auth E],
HI [auth D],
HR [auth S],
HU [auth W],
II [auth D],
IL [auth H],
KN [auth M],
KZ [auth 4],
RH [auth D],
TF [auth k],
UCA [auth 9],
VJ [auth F],
WJ [auth F],
XS [auth T],
YO [auth P]
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
C41 H78 O12 S
RVUUQPKXGDTQPG-JUDHQOGESA-N
LMG (Subject of Investigation/LOI)
Query on LMG
Download Ideal Coordinates CCD File 
AV [auth W]
BBA [auth 7]
BS [auth S]
CAA [auth 7]
CO [auth M]
AV [auth W],
BBA [auth 7],
BS [auth S],
CAA [auth 7],
CO [auth M],
CS [auth S],
DO [auth M],
IU [auth W],
IZ [auth 4],
JI [auth D],
JZ [auth 4],
NF [auth l],
NQ [auth Q],
OP [auth P],
QG [auth A],
RW [auth 0],
TCA [auth 9],
UJ [auth F],
WCA [auth I],
XJ [auth F]
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
C45 H86 O10
DCLTVZLYPPIIID-CVELTQQQSA-N
A1EB1 (Subject of Investigation/LOI)
Query on A1EB1
Download Ideal Coordinates CCD File 
ACA [auth 9]
AFA [auth z]
AHA [auth 2]
AK [auth G]
AT [auth U]
ACA [auth 9],
AFA [auth z],
AHA [auth 2],
AK [auth G],
AT [auth U],
AW [auth 0],
BH [auth C],
CBA [auth 8],
CK [auth G],
CM [auth K],
CT [auth U],
EAA [auth 7],
EM [auth K],
ES [auth T],
FAA [auth 7],
FBA [auth 8],
FK [auth G],
FM [auth K],
GAA [auth 7],
GEA [auth y],
GK [auth G],
GO [auth O],
HAA [auth 7],
HBA [auth 8],
HEA [auth y],
HJ [auth F],
IR [auth S],
JBA [auth 8],
JR [auth S],
JS [auth T],
JY [auth 3],
KI [auth E],
KL [auth J],
KY [auth 4],
LY [auth 4],
MY [auth 4],
NDA [auth h],
NX [auth 3],
NY [auth 4],
NZ [auth 5],
ODA [auth x],
OHA [auth 6],
OQ [auth Q],
OT [auth V],
OX [auth 3],
PDA [auth x],
RHA [auth 6],
RK [auth H],
RM [auth L],
RQ [auth R],
RT [auth V],
ST [auth V],
SW [auth 1],
THA [auth 6],
TT [auth V],
UK [auth H],
UX [auth 3],
VH [auth D],
VHA [auth 6],
VV [auth 0],
VX [auth 3],
WV [auth 0],
WW [auth 1],
YGA [auth 2],
YP [auth Q],
YV [auth 0],
ZEA [auth z]
[(2~{Z},4~{E},6~{E},8~{E},10~{E},12~{E},14~{E})-2-[2-[(4~{S},6~{R})-4-acetyloxy-2,2,6-trimethyl-6-oxidanyl-cyclohexylidene]ethenyl]-6,11,15-trimethyl-16-oxidanylidene-17-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]heptadeca-2,4,6,8,10,12,14-heptaenyl] hexanoate
C48 H68 O8
AJKIHQWOELANGE-NEPMVDICSA-N
LHG (Subject of Investigation/LOI)
Query on LHG
Download Ideal Coordinates CCD File 
CV [auth X]
FF [auth j]
HL [auth H]
MC [auth a]
NC [auth a]
CV [auth X],
FF [auth j],
HL [auth H],
MC [auth a],
NC [auth a],
OH [auth D],
PH [auth D]
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
C38 H75 O10 P
BIABMEZBCHDPBV-MPQUPPDSSA-N
A86 (Subject of Investigation/LOI)
Query on A86
Download Ideal Coordinates CCD File 
AP [auth P]
BCA [auth 9]
BFA [auth z]
BM [auth K]
BW [auth 0]
AP [auth P],
BCA [auth 9],
BFA [auth z],
BM [auth K],
BW [auth 0],
CCA [auth 9],
CH [auth C],
CW [auth 0],
DBA [auth 8],
DCA [auth 9],
DK [auth G],
DS [auth T],
DT [auth U],
DV [auth X],
EBA [auth 8],
ECA [auth 9],
EJ [auth F],
EV [auth X],
FGA [auth Z],
FJ [auth F],
FR [auth R],
GBA [auth 8],
HGA [auth Z],
HO [auth O],
HS [auth T],
IAA [auth 7],
IBA [auth 8],
IS [auth T],
JAA [auth 7],
JL [auth J],
JU [auth W],
KBA [auth 8],
KEA [auth y],
KR [auth S],
KU [auth W],
LEA [auth y],
LL [auth J],
LN [auth M],
LO [auth O],
LR [auth S],
LZ [auth 4],
MAA [auth 7],
MN [auth M],
MO [auth O],
MZ [auth 5],
NAA [auth 7],
NI [auth E],
NR [auth S],
NT [auth V],
NU [auth W],
OY [auth 4],
PHA [auth 6],
PM [auth L],
PN [auth M],
PQ [auth R],
PY [auth 4],
QHA [auth 6],
QM [auth L],
QQ [auth R],
QT [auth V],
QX [auth 3],
RFA [auth Y],
RG [auth B],
RX [auth 3],
SDA [auth x],
SH [auth D],
SHA [auth 6],
SK [auth H],
SM [auth L],
SP [auth Q],
SX [auth 3],
SY [auth 4],
TM [auth L],
TP [auth Q],
TW [auth 1],
TX [auth 3],
TY [auth 4],
UF [auth k],
UHA [auth 6],
UM [auth L],
UV [auth 0],
UW [auth 1],
VGA [auth 2],
VM [auth L],
VP [auth Q],
WGA [auth 2],
WHA [auth 6],
WP [auth Q],
XV [auth 0],
XW [auth 1],
YBA [auth 8],
YCA [auth I],
YW [auth 1],
ZBA [auth 9],
ZGA [auth 2],
ZJ [auth G],
ZO [auth P],
ZP [auth Q],
ZS [auth U],
ZV [auth 0]
(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate
C42 H58 O6
SJWWTRQNNRNTPU-XJUZQKKNSA-N
A1ECV (Subject of Investigation/LOI)
Query on A1ECV
Download Ideal Coordinates CCD File 
BR [auth R]
CGA [auth Y]
DEA [auth x]
DU [auth V]
EZ [auth 4]
BR [auth R],
CGA [auth Y],
DEA [auth x],
DU [auth V],
EZ [auth 4],
FHA [auth 2],
GN [auth L],
HIA [auth 6],
HQ [auth Q],
IFA [auth z],
JX [auth 1],
KQ [auth Q],
LV [auth X],
MCA [auth 9],
MGA [auth Z],
MP [auth P],
OFA [auth z],
OK [auth G],
OV [auth X],
OW [auth 0],
PCA [auth 9],
QEA [auth y],
SAA [auth 7],
SGA [auth Z],
SR [auth S],
TS [auth T],
UI [auth E],
UO [auth O],
UZ [auth 5],
WEA [auth y],
WFA [auth Y],
XDA [auth x],
XU [auth W],
XZ [auth 5],
YAA [auth 7],
YQ [auth R],
YR [auth S],
YY [auth 4],
ZN [auth M]
Chlorophyll C3
C36 H28 Mg N4 O7
TZRDXWQHZOYPDG-VKDSHVEMSA-L
KC2 (Subject of Investigation/LOI)
Query on KC2
Download Ideal Coordinates CCD File 
AEA [auth x]
AN [auth L]
AR [auth R]
AU [auth V]
AY [auth 3]
AEA [auth x],
AN [auth L],
AR [auth R],
AU [auth V],
AY [auth 3],
AZ [auth 4],
BIA [auth 6],
BL [auth H],
BU [auth V],
BZ [auth 4],
CEA [auth x],
CN [auth L],
CR [auth R],
CY [auth 3],
DIA [auth 6],
DN [auth L],
DP [auth P],
DX [auth 1],
DY [auth 3],
DZ [auth 4],
EIA [auth 6],
EL [auth H],
EQ [auth Q],
EU [auth V],
FN [auth L],
FX [auth 1],
GDA [auth I],
GIA [auth 6],
GQ [auth Q],
GR [auth R],
GU [auth V],
GX [auth 1],
GY [auth 3],
HHA [auth 2],
HP [auth P],
HV [auth X],
HW [auth 0],
HZ [auth 4],
IHA [auth 2],
JCA [auth 9],
JK [auth G],
JN [auth L],
JP [auth P],
JQ [auth Q],
JW [auth 0],
KFA [auth z],
KG [auth A],
KJ [auth F],
KM [auth K],
KP [auth P],
KW [auth 0],
LCA [auth 9],
LFA [auth z],
LH [auth C],
LHA [auth 2],
LK [auth G],
MH [auth C],
MW [auth 0],
NFA [auth z],
NG [auth A],
NK [auth G],
NM [auth K],
NV [auth X],
OCA [auth 9],
OGA [auth Z],
OJ [auth F],
OS [auth T],
OU [auth W],
PBA [auth 8],
PGA [auth Z],
PK [auth G],
PV [auth X],
QCA [auth 9],
QN [auth M],
QS [auth T],
QV [auth X],
QZ [auth 5],
RBA [auth 8],
RP [auth P],
RS [auth T],
SBA [auth 8],
SEA [auth y],
SS [auth T],
SU [auth W],
TEA [auth y],
TV [auth X],
UAA [auth 7],
UBA [auth 8],
UN [auth M],
UQ [auth R],
UR [auth S],
UT [auth V],
UU [auth W],
VAA [auth 7],
VBA [auth 8],
VEA [auth y],
VR [auth S],
VU [auth W],
WN [auth M],
WO [auth O],
WZ [auth 5],
XAA [auth 7],
XCA [auth I],
XL [auth J],
XN [auth M],
XR [auth S],
YFA [auth Y],
YG [auth B],
YT [auth V],
YZ [auth 5],
ZDA [auth x],
ZFA [auth Y],
ZZ [auth 5]
Chlorophyll c2
C35 H28 Mg N4 O5
QDRBYWCRXZZVLY-QIEHNWLWSA-L
DD6 (Subject of Investigation/LOI)
Query on DD6
Download Ideal Coordinates CCD File 
ADA [auth I]
AH [auth C]
BDA [auth I]
BG [auth A]
BK [auth G]
ADA [auth I],
AH [auth C],
BDA [auth I],
BG [auth A],
BK [auth G],
BP [auth P],
BT [auth U],
CFA [auth z],
CG [auth A],
DF [auth j],
DFA [auth z],
DG [auth A],
DM [auth K],
EG [auth A],
EK [auth G],
FS [auth T],
FV [auth X],
GGA [auth Z],
GJ [auth F],
IEA [auth y],
IJ [auth F],
IO [auth O],
JEA [auth y],
JO [auth O],
KAA [auth 7],
KO [auth O],
LAA [auth 7],
LI [auth E],
LU [auth W],
MI [auth E],
ML [auth J],
MR [auth S],
MX [auth 3],
NL [auth J],
NN [auth M],
OI [auth E],
OL [auth J],
OZ [auth 5],
PT [auth V],
PX [auth 3],
QDA [auth x],
QH [auth D],
QY [auth 4],
RDA [auth x],
RY [auth 4],
SC [auth a],
SG [auth B],
SQ [auth R],
TH [auth D],
TK [auth H],
UH [auth D],
UP [auth Q],
VK [auth H],
VW [auth 1],
XGA [auth 2],
XP [auth Q],
YF [auth o],
ZCA [auth I]
(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol
C40 H54 O3
OGHZCSINIMWCSB-WMTIXGNLSA-N
BCR (Subject of Investigation/LOI)
Query on BCR
Download Ideal Coordinates CCD File 
AF [auth i]
EF [auth j]
HF [auth l]
LE [auth b]
LF [auth l]
AF [auth i],
EF [auth j],
HF [auth l],
LE [auth b],
LF [auth l],
MDA [auth h],
ME [auth b],
MF [auth l],
NE [auth b],
OC [auth a],
OE [auth b],
OF [auth m],
PC [auth a],
PE [auth b],
QC [auth a],
RC [auth a],
RE [auth b],
SF [auth k],
VE [auth f],
YE [auth f]
BETA-CAROTENE
C40 H56
OENHQHLEOONYIE-JLTXGRSLSA-N
PQN (Subject of Investigation/LOI)
Query on PQN
Download Ideal Coordinates CCD File 
KE [auth b],
LC [auth a]		PHYLLOQUINONE
C31 H46 O2
MBWXNTAXLNYFJB-NKFFZRIASA-N
SF4 (Subject of Investigation/LOI)
Query on SF4
Download Ideal Coordinates CCD File 
TE [auth c],
UE [auth c],
XC [auth b]		IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.79 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.19.2_4158:

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChina--

Revision History  (Full details and data files)

  • Version 1.0: 2025-08-20
    Type: Initial release
  • Version 2.0: 2025-10-15
    Changes: Atomic model, Data collection, Structure summary