9JFK | pdb_00009jfk

Cryo-EM structure of [Pen5]-urotensin (4-11)-bounded human Urotensin receptor (UTS2R)-Gq complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.23 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Structural insights into hormone recognition and G-protein coupling of the urotensin-II receptor.

Gao, T.You, C.Cao, Y.Xu, X.Yuan, Q.Shen, S.Xu, H.E.Duan, J.

(2025) J Biological Chem 301: 110794-110794

  • DOI: https://doi.org/10.1016/j.jbc.2025.110794
  • Primary Citation of Related Structures:  
    9JFK

  • PubMed Abstract: 

    Urotensin-II (U-II) is a potent vasoconstrictor peptide that interacts with the human urotensin-II receptor (UTR), a class A G protein-coupled receptor (GPCR) that primarily couples with G q proteins. In this study, we present the cryo-electron microscopy structure of the miniG q -coupled UTR bound to the potent UTR agonist P5U, providing insights into unique ligand recognition and activation mechanisms. Unlike typical linear peptides, the cyclic structure of P5U engages the receptor's transmembrane domains through key side chain interactions involving residues F6, W7, K8, and Y9, which are crucial for receptor activation. Comparative analysis with somatostatin receptors (SSTRs) reveals distinct ligand specificity, driven by variations in side chain composition. Notably, we identify F274 6.51 as the toggle switch residue in UTR, in contrast to the classical W 6.48 seen in other GPCRs. Our findings elucidate the structural basis for UTR's G q coupling specificity, highlighting unique Gα q interactions. This study advances the understanding of U-II signaling and offers a foundation for developing selective UTR modulators, with potential therapeutic implications for cardiovascular diseases linked to dysregulated U-II activity.


  • Organizational Affiliation
    • School of Life Science and Technology, ShanghaiTech University, Shanghai, China; State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1345Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
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Go to UniProtKB:  P62873
PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
G subunit q (gi2-mini-gq chimeric)246Homo sapiensMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth D]70Homo sapiensMutation(s): 0 
Gene Names: GNG2
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Find proteins for P59768 (Homo sapiens)
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Go to UniProtKB:  P59768
PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Nano body 35D [auth N]128Lama glamaMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Urotensin-2 receptorE [auth R]347Homo sapiensMutation(s): 0 
Gene Names: UTS2RGPR14
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Find proteins for Q9UKP6 (Homo sapiens)
Explore Q9UKP6 
Go to UniProtKB:  Q9UKP6
PHAROS:  Q9UKP6
GTEx:  ENSG00000181408 
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UniProt GroupQ9UKP6
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
ASP-LE1-PHE-TRP-LYS-TYR-CYS-VALF [auth C]8synthetic constructMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
LE1
Query on LE1
F [auth C]L-PEPTIDE LINKINGC5 H11 N O2 SVAL
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.23 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-03
    Type: Initial release