9JBV | pdb_00009jbv

Structure of Engineered Coagulation Factor VIII with Enhanced Secretion and Coagulation Potential

PDB DOI: https://doi.org/10.2210/pdb9JBV/pdb
EM Map EMD-61327: EMDB EMDataResource

Classification: BLOOD CLOTTING
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2024-08-27 Released: 2025-09-10
Deposition Author(s): Kio, H., Osamu, N., Tsukasa, O.
Funding Organization(s): Japan Agency for Medical Research and Development (AMED)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Engineered Coagulation Factor VIII with Enhanced Secretion and Coagulation Potential for Hemophilia Gene Therapy

Yuji, K., Yuto, N., Kio, H., Tiago, L., Yuma, F., Yuki, Y., Nemekhbayar, B., Morisada, H., Yuko, K., Susumu, U., Osamu, N., Keiji, N., Tsukasa, O.

To be published.

Macromolecule Content

Total Structure Weight: 167.45 kDa
Atom Count: 10,291
Modeled Residue Count: 1,276
Deposited Residue Count: 1,457
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Coagulation factor VIII	A	1,457	Homo sapiens	Mutation(s): 0 Gene Names: F8, F8C
UniProt & NIH Common Fund Data Resources
Find proteins for P00451 (Homo sapiens) Explore P00451 Go to UniProtKB: P00451
PHAROS: P00451 GTEx: ENSG00000185010
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P00451
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-09-10

Deposition Author(s):

Funding Organization	Location	Grant Number
Japan Agency for Medical Research and Development (AMED)	Japan	--

Revision History (Full details and data files)

Version 1.0: 2025-09-10
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.