9J9B | pdb_00009j9b

Substrate-engaged TIM23 complex from yeast

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Substrate-engaged TIM23 complex from yeast

Yang, Y.Q., Wang, G.P.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial import inner membrane translocase subunit TIM17158Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TIM17, MIM17, MPI2, SMS1, YJL143W, J0648
UniProt
Find proteins for P39515 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP39515
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial import inner membrane translocase subunit TIM23222Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TIM23, MAS6, MIM23, MPI3, YNR017W, N3180
UniProt
Find proteins for P32897 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP32897
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial import inner membrane translocase subunit TIM44,L-lactate dehydrogenase (cytochrome),sfGFP757Saccharomyces cerevisiae S288C, synthetic constructMutation(s): 0 
Gene Names: TIM44, ISP45, MIM44, MPI1, YIL022W, CYB2, YML054C, YM9958.08C
EC: 1.1.2.3
UniProt
Find proteins for P00175 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Find proteins for Q01852 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  Q01852
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UniProt GroupsQ01852P00175
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Protein MGR2113Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: MGR2, YPL098C
UniProt
Find proteins for Q02889 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupQ02889
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
anti-Tim44-Fab H chainE [auth H]238Saccharomyces cerevisiae S288CMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
anti-Tim44-Fab L chainF [auth L]238Saccharomyces cerevisiae S288CMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
SubstrateG [auth E]15Saccharomyces cerevisiae S288CMutation(s): 0 
Sequence Annotations
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Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CDL (Subject of Investigation/LOI)
Query on CDL
Download Ideal Coordinates CCD File 
H [auth A]CARDIOLIPIN
C81 H156 O17 P2
XVTUQDWPJJBEHJ-KZCWQMDCSA-L
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC

Structure Validation

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View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32271269

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-10
    Type: Initial release