9J6L | pdb_00009j6l

Solution structure of human Glutathione Peroxidase 4 (Sec73Cys) with eight mutations

PDB DOI: https://doi.org/10.2210/pdb9J6L/pdb

Classification: APOPTOSIS
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2024-08-16 Released: 2025-08-20
Deposition Author(s): Furuita, K., Sugiki, T., Inomata, K., Miyanoiri, Y., Kobayashi, N., Fujiwara, T., Kojima, C.
Funding Organization(s): Japan Society for the Promotion of Science (JSPS), Japan Agency for Medical Research and Development (AMED)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 9J6L

This is version 1.0 of the entry. See complete history.

Literature

Glutathione Disulfide Acts as a Feedback Inhibitor of GPx4 Redox Reaction through Allosteric Regulation

Inomata, K., Furuita, K., Sugiki, T., Nakada, K., Kodama, T.S., Miyanoiri, Y., Kobayashi, N., Fujiwara, T., Kojima, C.

To be published.

Macromolecule Content

Total Structure Weight: 19.85 kDa
Atom Count: 1,399
Modeled Residue Count: 174
Deposited Residue Count: 174
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phospholipid hydroperoxide glutathione peroxidase GPX4	A	174	Homo sapiens	Mutation(s): 9 Gene Names: GPX4 EC: 1.11.1.12 (PDB Primary Data), 1.11.1.9 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for P36969 (Homo sapiens) Explore P36969 Go to UniProtKB: P36969
PHAROS: P36969 GTEx: ENSG00000167468
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P36969
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-08-20

Deposition Author(s):

Funding Organization	Location	Grant Number
Japan Society for the Promotion of Science (JSPS)	Japan	19H04856
Japan Society for the Promotion of Science (JSPS)	Japan	22H05536
Japan Society for the Promotion of Science (JSPS)	Japan	20H03191
Japan Society for the Promotion of Science (JSPS)	Japan	22K19184
Japan Agency for Medical Research and Development (AMED)	Japan	JP21am0101072

Revision History (Full details and data files)

Version 1.0: 2025-08-20
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.