9J05 | pdb_00009j05

Apo state purinergic receptor P2Y14-BRIL/PPTN/1B3 Fab-4/9Glue

PDB DOI: https://doi.org/10.2210/pdb9J05/pdb
EM Map EMD-61049: EMDB EMDataResource

Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM
Organism(s): Homo sapiens, Escherichia coli
Expression System: Trichoplusia ni
Mutation(s): No
Membrane Protein: Yes MemProtMD

Deposited: 2024-08-02 Released: 2025-08-06
Deposition Author(s): Wang, T.X., Tang, W.Q.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9J05

This is version 1.0 of the entry. See complete history.

Literature

Apo state purinergic receptor P2Y14-BRIL/PPTN/1B3 Fab-4/9Glue

Wang, T.X., Tang, W.Q.

To be published.

Macromolecule Content

Total Structure Weight: 116.56 kDa
Atom Count: 5,911
Modeled Residue Count: 799
Deposited Residue Count: 1,046
Unique protein chains: 3

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
P2Y purinoceptor 14,Soluble cytochrome b562	A	506	Homo sapiens, Escherichia coli	Mutation(s): 0 Gene Names: P2RY14, GPR105, KIAA0001, cybC Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q15391 (Homo sapiens) Explore Q15391 Go to UniProtKB: Q15391
PHAROS: Q15391 GTEx: ENSG00000174944
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q15391
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Antibody 1b3 Fab Heavy chain	B	284	Homo sapiens	Mutation(s): 0

Find similar proteins by:

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Antibody 1b3 Fab Light chain	C	256	Homo sapiens	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-08-06

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2025-08-06
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.