9IZ9 | pdb_00009iz9

Deposited: 2024-08-01 Released: 2025-08-06
Deposition Author(s): Han, X., Ji, C., Wang, F., Tian, S., Gao, F.G., Yan, J.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
C37 Fab, Heavy chain	A [auth S], O [auth Q], Q [auth O], S [auth M]	265	Homo sapiens	Mutation(s): 0

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
C37 Fab, Light chain	B [auth T], P [auth R], R [auth P], T [auth N]	241	Homo sapiens	Mutation(s): 0

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
CHIKV E1	C [auth A], D [auth B], E [auth C], F [auth D]	439	Chikungunya virus	Mutation(s): 0
UniProt
Find proteins for A0A286S4J4 (Chikungunya virus) Explore A0A286S4J4 Go to UniProtKB: A0A286S4J4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A286S4J4
Glycosylation
Glycosylation Sites: 1	Glycosylation Focus chain C [auth A] Focus chain D [auth B] Focus chain E [auth C] Focus chain F [auth D]
Sequence Annotations Expand
Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Structural polyprotein	G [auth E], H [auth F], I [auth G], J [auth H]	419	Chikungunya virus	Mutation(s): 0 Gene Names: CHIKVgp2
UniProt
Find proteins for D7R9A2 (Chikungunya virus) Explore D7R9A2 Go to UniProtKB: D7R9A2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D7R9A2
Glycosylation
Glycosylation Sites: 2	Glycosylation Focus chain G [auth E] Focus chain H [auth F] Focus chain I [auth G] Focus chain J [auth H]
Sequence Annotations Expand
Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
CHIKV capsid protein	K [auth I], L [auth J], M [auth K], N [auth L]	151	Chikungunya virus	Mutation(s): 0 EC: 3.4.21.90
UniProt
Find proteins for A0A6B9KBE1 (Chikungunya virus) Explore A0A6B9KBE1 Go to UniProtKB: A0A6B9KBE1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A6B9KBE1
Sequence Annotations Expand
Reference Sequence

Entity ID: 6
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	U, V, X	4		N-Glycosylation	Interactions Focus chain U Focus chain V Focus chain X Interactions & Density Focus chain U Focus chain V Focus chain X
Glycosylation Resources
GlyTouCan: G32152BH GlyCosmos: G32152BH GlyGen: G32152BH

Entity ID: 7
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	W	5		N-Glycosylation	Interactions Focus chain W Interactions & Density Focus chain W
Glycosylation Resources
GlyTouCan: G42466VF GlyCosmos: G42466VF GlyGen: G42466VF

Entity ID: 8
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	CA [auth c], EA [auth e], Y	5		N-Glycosylation	Interactions Focus chain CA [auth c] Focus chain EA [auth e] Focus chain Y Interactions & Density Focus chain CA [auth c] Focus chain EA [auth e] Focus chain Y
Glycosylation Resources
GlyTouCan: G10133VD GlyCosmos: G10133VD GlyGen: G10133VD

Entity ID: 9
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	BA [auth b], DA [auth d], Z	3		N-Glycosylation	Interactions Focus chain BA [auth b] Focus chain DA [auth d] Focus chain Z Interactions & Density Focus chain BA [auth b] Focus chain DA [auth d] Focus chain Z
Glycosylation Resources
GlyTouCan: G15407YE GlyCosmos: G15407YE GlyGen: G15407YE

Entity ID: 10
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	AA [auth a]	4		N-Glycosylation	Interactions Focus chain AA [auth a] Interactions & Density Focus chain AA [auth a]
Glycosylation Resources
GlyTouCan: G81315DD GlyCosmos: G81315DD GlyGen: G81315DD

Entity ID: 11
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	FA [auth f]	4		N-Glycosylation	Interactions Focus chain FA [auth f] Interactions & Density Focus chain FA [auth f]
Glycosylation Resources
GlyTouCan: G22573RC GlyCosmos: G22573RC GlyGen: G22573RC

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CLR Query on CLR Download:Ideal Coordinates CCD File SDF format, chain JA [auth G] SDF format, chain IA [auth E] SDF format, chain HA [auth D] SDF format, chain GA [auth B] MOL2 format, chain JA [auth G] MOL2 format, chain IA [auth E] MOL2 format, chain HA [auth D] MOL2 format, chain GA [auth B] mmCIF format, chain JA [auth G] mmCIF format, chain IA [auth E] mmCIF format, chain HA [auth D] mmCIF format, chain GA [auth B]	GA [auth B], HA [auth D], IA [auth E], JA [auth G]	CHOLESTEROL C₂₇ H₄₆ O HVYWMOMLDIMFJA-DPAQBDIFSA-N		Interactions Focus chain GA [auth B] Focus chain HA [auth D] Focus chain IA [auth E] Focus chain JA [auth G] Interactions & Density Focus chain GA [auth B] Focus chain HA [auth D] Focus chain IA [auth E] Focus chain JA [auth G]