9IWR | pdb_00009iwr

26S proteasome trimer

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.10 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Metabolically regulated proteasome supramolecular organization

Tang, X., Qu, L., Florian, W., Oliver, P.E., Brenda, A.S., Baumeister, W., Cordula, E.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit beta type-1A [auth 1],
OA [auth h]		215Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PRE3, YJL001W, J1407
EC: 3.4.25.1
UniProt
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit beta type-2B [auth 2],
PA [auth i]		261Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PUP1, YOR157C
EC: 3.4.25.1
UniProt
Find proteins for P25043 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit beta type-3C [auth 3],
QA [auth j]		205Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PUP3, YER094C
EC: 3.4.25.1
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit beta type-4D [auth 4],
RA [auth k]		198Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PRE1, YER012W
EC: 3.4.25.1
UniProt
Find proteins for P22141 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit beta type-5E [auth 5],
SA [auth l]		287Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PRE2, DOA3, PRG1, YPR103W, P8283.10
EC: 3.4.25.1
UniProt
Find proteins for P30656 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit beta type-6F [auth 6],
TA [auth m]		241Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PRE7, PRS3, PTS1, YBL041W, YBL0407
EC: 3.4.25.1
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit beta type-7G [auth 7],
UA [auth n]		266Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PRE4, YFR050C
EC: 3.4.25.1
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit alpha type-1H [auth A],
HA [auth a]		252Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SCL1, PRC2, PRS2, YGL011C
EC: 3.4.25.1
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit alpha type-2I [auth B],
IA [auth b]		250Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PRE8, PRS4, YML092C
EC: 3.4.25.1
UniProt
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit alpha type-3J [auth C],
JA [auth c]		258Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PRE9, PRS5, YGR135W
EC: 3.4.25.1
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit alpha type-4K [auth D],
KA [auth d]		254Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PRE6, YOL038W
EC: 3.4.25.1
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit alpha type-5L [auth E],
LA [auth e]		260Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PUP2, DOA5, YGR253C, G9155
EC: 3.4.25.1
UniProt
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Proteasome subunit alpha type-6M [auth F],
MA [auth f]		234Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PRE5, YMR314W, YM9924.06
EC: 3.4.25.1
UniProt
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Probable proteasome subunit alpha type-7N [auth G],
NA [auth g]		288Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PRE10, PRC1, PRS1, YOR362C, O6650
EC: 3.4.25.1
UniProt
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
26S protease regulatory subunit 7 homologO [auth H]467Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPT1, CIM5, YTA3, YKL145W
UniProt
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
26S protease regulatory subunit 4 homologP [auth I]437Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPT2, YHS4, YTA5, YDL007W, D2920
UniProt
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
26S protease regulatory subunit 8 homologQ [auth J]405Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPT6, CIM3, CRL3, SUG1, TBPY, TBY1, YGL048C
UniProt
Find proteins for Q01939 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
26S protease regulatory subunit 6B homologR [auth K]428Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPT3, YNT1, YTA2, YDR394W, D9509.14
UniProt
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
26S protease subunit RPT4S [auth L]437Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPT4, CRL13, PCS1, SUG2, YOR259C
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
26S protease regulatory subunit 6AT [auth M]434Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPT5, YTA1, YOR117W, O3258, YOR3258W
UniProt
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit RPN2U [auth N]945Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPN2, SEN3, YIL075C
UniProt
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit RPN9V [auth O]393Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPN9, NAS7, YDR427W, D9461.14
UniProt
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit RPN5W [auth P]445Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPN5, NAS5, YDL147W, D1572
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit RPN6X [auth Q]434Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPN6, NAS4, YDL097C, D2381
UniProt
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit RPN7Y [auth R]429Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPN7, YPR108W, P8283.8
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit RPN3Z [auth S]523Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPN3, SUN2, YER021W
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit RPN12AA [auth T]274Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPN12, NIN1, YFR052W
UniProt
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit RPN8BA [auth U]338Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPN8, YOR261C, O5360
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin carboxyl-terminal hydrolase RPN11CA [auth V]306Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPN11, MPR1, YFR004W
EC: 3.4.19.12
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit RPN10DA [auth W]268Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPN10, MCB1, SUN1, YHR200W
UniProt
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit RPN13EA [auth X]156Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPN13, DAQ1, YLR421C
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome complex subunit SEM1FA [auth Y]89Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SEM1, DSH1, YDR363W-A
UniProt
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome regulatory subunit RPN1GA [auth Z]993Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RPN1, HRD2, NAS1, RPD1, YHR027C
UniProt
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.10 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Max Planck SocietyGermany--
Jung foundationGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2026-01-28
    Type: Initial release