9IT1

Crystal structure of Pin1 using laue diffraction

• PDB DOI: https://doi.org/10.2210/pdb9IT1/pdb

• Classification: CELL CYCLE
• Organism(s): Homo sapiens
• Expression System: Escherichia
• Mutation(s): No 


• Deposited: 2024-07-19 Released: 2024-08-21 
• Deposition Author(s): Sun, B., Qi, Q., Xiao, Q.J., Wang, Z.J.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.339 
• R-Value Work: 0.318 
• R-Value Observed: 0.320 

Starting Model: experimental

Literature

Crystal structure of Prolyl Isomerase NIMA-interacting 1 (Pin1) using laue diffraction

Sun, B., Qi, Q., Xiao, Q.J., Wang, Z.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 18.49 kDa 
• Atom Count: 1,197 
• Modelled Residue Count: 145 
• Deposited Residue Count: 164 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	A	164	Homo sapiens	Mutation(s): 0  Gene Names: PIN1 EC: 5.2.1.8
UniProt & NIH Common Fund Data Resources
Find proteins for Q13526 (Homo sapiens) Explore Q13526  Go to UniProtKB:  Q13526
PHAROS:  Q13526 GTEx:  ENSG00000127445

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
P3G	B [auth A]	3,6,9,12,15-PENTAOXAHEPTADECANE C12 H26 O5 HYDWALOBQJFOMS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.339 
• R-Value Work: 0.318 
• R-Value Observed: 0.320 
• Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.2	α = 90
b = 68.2	β = 90
c = 78.7	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-08-21 
Deposition Author(s): Sun, B., Qi, Q., Xiao, Q.J., Wang, Z.J.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32271248
National Natural Science Foundation of China (NSFC)	China	32200988

Revision History  

• Version 1.0: 2024-08-21
  Type: Initial release