9IID

Crystal structure of PgAfp

• PDB DOI: https://doi.org/10.2210/pdb9IID/pdb

• Classification: ANTIMICROBIAL PROTEIN
• Organism(s): Penicillium chrysogenum
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-06-20 Released: 2024-07-10 
• Deposition Author(s): Wang, Y.
• Funding Organization(s): National Science Foundation (NSF, China)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.78 Å
• R-Value Free: 0.216 
• R-Value Work: 0.172 
• R-Value Observed: 0.174 

Starting Model: experimental

Literature

Crystal structure of PgAfp

Wang, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 6.67 kDa 
• Atom Count: 523 
• Modelled Residue Count: 58 
• Deposited Residue Count: 60 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Antifungal protein B	A	60	Penicillium chrysogenum	Mutation(s): 0  Gene Names: pafB
UniProt
Find proteins for D0EXD3 (Penicillium chrysogenum) Explore D0EXD3  Go to UniProtKB:  D0EXD3

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.78 Å
• R-Value Free: 0.216 
• R-Value Work: 0.172 
• R-Value Observed: 0.174 
• Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.76	α = 90
b = 61.76	β = 90
c = 42	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
DIALS	data reduction
DIALS	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-07-10 
Deposition Author(s): Wang, Y.

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Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	--

Revision History  

• Version 1.0: 2024-07-10
  Type: Initial release