9IAE | pdb_00009iae

Structure of a Chimeric Protein Composed of the SNX5 PX Domain and the N-Terminal Region of NCOA7-AS, crystal form I

PDB DOI: https://doi.org/10.2210/pdb9IAE/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2025-02-10 Released: 2026-01-28
Deposition Author(s): Arnaud-Arnould, M., Rebendenne, A., Tauziet, M., Urbach, S., El Koulali, K., Ricci, E., Wencker, M., Moncorge, O., Blaise, M., Goujon, C.
Funding Organization(s): Agence Nationale de la Recherche (ANR), European Research Council (ERC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.240 (Depositor), 0.240 (DCC)
R-Value Work:
0.201 (Depositor), 0.201 (DCC)
R-Value Observed:
0.205 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

SNX-BAR proteins 5 and 6 are required for NCOA7-AS antiviral activity against influenza A virus

Arnaud-Arnould, M., Rebendenne, A., Tauziet, M., Urbach, S., El Koulali, K., Ricci, E., Wencker, M., Moncorge, O., Blaise, M., Goujon, C.

(2025) bioRxiv

DOI: https://doi.org/10.1101/2025.04.01.646557

Macromolecule Content

Total Structure Weight: 20.7 kDa
Atom Count: 1,595
Modeled Residue Count: 173
Deposited Residue Count: 178
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sorting nexin-5,Nuclear receptor coactivator 7	A	178	Homo sapiens	Mutation(s): 0 Gene Names: SNX5, NCOA7
UniProt & NIH Common Fund Data Resources
Find proteins for H0Y6T0 (Homo sapiens) Explore H0Y6T0 Go to UniProtKB: H0Y6T0
GTEx: ENSG00000111912
Find proteins for Q9Y5X3 (Homo sapiens) Explore Q9Y5X3 Go to UniProtKB: Q9Y5X3
PHAROS: Q9Y5X3 GTEx: ENSG00000089006
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	Q9Y5X3H0Y6T0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
CME Query on CME	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₃ S₂		CYS

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.240 (Depositor), 0.240 (DCC)
R-Value Work: 0.201 (Depositor), 0.201 (DCC)
R-Value Observed: 0.205 (Depositor)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.13	α = 90
b = 63.13	β = 90
c = 101.51	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2026-01-28

Deposition Author(s):

Arnaud-Arnould, M.

Funding Organization	Location	Grant Number
Agence Nationale de la Recherche (ANR)	France	ANR-20-CE15-0010-02
European Research Council (ERC)	European Union	759226

Revision History (Full details and data files)

Version 1.0: 2026-01-28
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.