9I9D | pdb_00009i9d

CP of RHDV virion (full particle)

• PDB DOI: https://doi.org/10.2210/pdb9I9D/pdb
• EM Map EMD-52757: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Oryctolagus cuniculus
• Mutation(s): No 


• Deposited: 2025-02-06 Released: 2025-11-26 
• Deposition Author(s): Novoa, G., Martinez-Romero, J.M., Perez-Mata, C., Barcena, J., Caston, J.R.
• Funding Organization(s): Spanish Ministry of Science, Innovation, and Universities

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.30 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental

Literature

Structure of full RHDV virion at 3.3 Angstroms resolution

Novoa, G., Martinez-Romero, J.M., Perez-Mata, C., Barcena, J., Caston, J.R.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 180-mer - A180 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 180.03 kDa 
• Atom Count: 12,123 
• Modeled Residue Count: 1,644 
• Deposited Residue Count: 1,731 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP60	A, B, C	577	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for Q86119 (Rabbit hemorrhagic disease virus (strain AST89)) Explore Q86119  Go to UniProtKB:  Q86119

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.30 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-11-26 
Deposition Author(s): Novoa, G., Martinez-Romero, J.M., Perez-Mata, C., Barcena, J., Caston, J.R.

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Funding Organization	Location	Grant Number
Spanish Ministry of Science, Innovation, and Universities	Spain	PID2023-146143NB-I00
Spanish Ministry of Science, Innovation, and Universities	Spain	PID2022-140925OB-I00

Revision History  

• Version 1.0: 2025-11-26
  Type: Initial release