9I8C | pdb_00009i8c

GBSV1 portal protein without the N-terminal tail

PDB DOI: https://doi.org/10.2210/pdb9I8C/pdb
EM Map EMD-52713: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Geobacillus phage GBSV1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2025-02-04 Released: 2026-02-18
Deposition Author(s): Chong, P.J., Chechik, M., Jenkins, H., Greive, S., Antson, F.
Funding Organization(s): Biotechnology and Biological Sciences Research Council (BBSRC), Other private

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

GBSV1 portal protein without the N-terminal tail

Chong, P.J., Chechik, M., Jenkins, H., Greive, S., Antson, F.

To be published.

Macromolecule Content

Total Structure Weight: 38.27 kDa
Atom Count: 2,693
Modeled Residue Count: 338
Deposited Residue Count: 338
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phage portal protein	A	338	Geobacillus phage GBSV1	Mutation(s): 0
UniProt
Find proteins for Q0H263 (Geobacillus phage GBSV1) Explore Q0H263 Go to UniProtKB: Q0H263
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q0H263
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21.1_5286
RECONSTRUCTION	RELION	4

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-02-18

Deposition Author(s):

Funding Organization	Location	Grant Number
Biotechnology and Biological Sciences Research Council (BBSRC)	United Kingdom	--
Other private	France	--

Revision History (Full details and data files)

Version 1.0: 2026-02-18
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.