9I3H | pdb_00009i3h

CP of RHDV mutant - N15

• PDB DOI: https://doi.org/10.2210/pdb9I3H/pdb
• EM Map EMD-52593: EMDB EMDataResource

• Classification: VIRUS LIKE PARTICLE
• Organism(s): Rabbit hemorrhagic disease virus-AST89, Oryctolagus cuniculus
• Expression System: Trichoplusia ni
• Mutation(s): No 


• Deposited: 2025-01-23 Released: 2025-11-26 
• Deposition Author(s): Novoa, G., Martinez-Romero, J.M., Perez-Mata, C., Barcena, J., Caston, J.R.
• Funding Organization(s): Spanish Ministry of Science, Innovation, and Universities

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.50 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structure of RHDV mutant N15 at 2.5 Angstroms resolution

Novoa, G., Martinez-Romero, J.M., Perez-Mata, C., Barcena, J., Caston, J.R.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Hetero 240-mer - A180B60 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 240-mer - AA180AB1AC1AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 173.91 kDa 
• Atom Count: 12,140 
• Modeled Residue Count: 1,644 
• Deposited Residue Count: 1,665 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP60	A, C	551	Rabbit hemorrhagic disease virus-AST89	Mutation(s): 0  Gene Names: ORF1
UniProt
Find proteins for Q86119 (Rabbit hemorrhagic disease virus (strain AST89)) Explore Q86119  Go to UniProtKB:  Q86119

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP60	B	551	Rabbit hemorrhagic disease virus-AST89	Mutation(s): 0  Gene Names: ORF1
UniProt
Find proteins for Q86119 (Rabbit hemorrhagic disease virus (strain AST89)) Explore Q86119  Go to UniProtKB:  Q86119

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Three-fold helix	D	12	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for P03311 (Foot-and-mouth disease virus (isolate -/Spain/S8c1SantaPau/1970 serotype C)) Explore P03311  Go to UniProtKB:  P03311

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.50 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21.2_5419
RECONSTRUCTION	cryoSPARC

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-11-26 
Deposition Author(s): Novoa, G., Martinez-Romero, J.M., Perez-Mata, C., Barcena, J., Caston, J.R.

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Funding Organization	Location	Grant Number
Spanish Ministry of Science, Innovation, and Universities	Spain	PID2023-146143NB-I00
Spanish Ministry of Science, Innovation, and Universities	Spain	PID2022-140925OB-I00

Revision History  

• Version 1.0: 2025-11-26
  Type: Initial release