9HW9 | pdb_00009hw9

Structural characterization of the type 3 fimbrial subunit MrkA from Klebsiella pneumoniae by solution NMR spectroscopy


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

wwPDB Validation 3D Report Full Report

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Literature

Biological and structural characterization of the Type 3 fimbrial subunit MrkA from Klebsiella pneumoniae.

Monaci, V.Oldrini, D.Gasperini, G.Banci, L.Cantini, F.Micoli, F.

(2025) Protein Sci 34: e70343-e70343

  • DOI: https://doi.org/10.1002/pro.70343

  • PubMed Abstract: 

    Klebsiella pneumoniae is a Gram-negative opportunistic pathogen responsible for a wide range of community-associated and hospital-acquired infections and a major cause of neonatal sepsis in low- and middle-income countries. The pathogen's surface fimbriae, particularly the Type 3 fimbriae, are critical for bacterial adhesion, biofilm formation, and host defense evasion. MrkA, the pathogen's major Type 3 fimbrial subunit, has a structural function in fimbrial assembly, but its three-dimensional structure remains to be fully elucidated. In this study, we utilized solution-state nuclear magnetic resonance spectroscopy to elucidate the structure of MrkA, leveraging previously reported chemical shift assignments of a designed self-complementing monomeric protein. Additionally, we confirmed the ability of monoclonal antibodies, capable of recognizing MrkA oligomers on wild-type Klebsiella bacteria, to bind the recombinant MrkA protein. Our findings contribute to the evaluation of MrkA as a potential target in vaccine development against Klebsiella pneumoniae infections.


  • Organizational Affiliation
    • Magnetic Resonance Center - CERM, University of Florence, Florence, Italy.

Macromolecule Content 

  • Total Structure Weight: 20.64 kDa 
  • Atom Count: 1,452 
  • Modeled Residue Count: 201 
  • Deposited Residue Count: 201 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Fimbrial subunit type 3201Klebsiella pneumoniaeMutation(s): 0 
Gene Names: mrkA
UniProt
Find proteins for P12267 (Klebsiella pneumoniae)
Explore P12267 
Go to UniProtKB:  P12267
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP12267
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: target function 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Italian Ministry of HealthItalyPAN-HUB 2021-T4-AN-07-CUP B93C22000920001

Revision History  (Full details and data files)

  • Version 1.0: 2025-11-05
    Type: Initial release