9HTF | pdb_00009htf

Beta-cardiac myosin Y115H mutant motor domain in the pre-powerstroke state, MgADP.VO4 form

  • Classification: MOTOR PROTEIN
  • Organism(s): Homo sapiens
  • Expression System: Mus musculus
  • Mutation(s): Yes 

  • Deposited: 2024-12-19 Released: 2025-10-22 
  • Deposition Author(s): Glaser, C., Houdusse, A.
  • Funding Organization(s): Fondation pour la Recherche Medicale (FRM), Laboratories of Excellence (LabEx), IdEx Universite Paris Cite, Centre National de la Recherche Scientifique (CNRS), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free: 
    0.255 (Depositor), 0.247 (DCC) 
  • R-Value Work: 
    0.207 (Depositor), 0.201 (DCC) 
  • R-Value Observed: 
    0.209 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


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Literature

Hypertrophic cardiomyopathy mutations Y115H and E497D disrupt the folded-back state of human beta-cardiac myosin allosterically.

Nandwani, N.Bhowmik, D.Glaser, C.Childers, M.C.Goluguri, R.R.Dawood, A.Regnier, M.Houdusse, A.Spudich, J.A.Ruppel, K.M.

(2025) Nat Commun 16: 8751-8751

  • DOI: https://doi.org/10.1038/s41467-025-63816-1
  • Primary Citation of Related Structures:  
    9HTF, 9HTG, 9I8P

  • PubMed Abstract: 

    At the molecular level, clinical hypercontractility associated with many hypertrophic cardiomyopathy (HCM)-causing mutations in β-cardiac myosin appears to be driven by their disruptive effect on the energy-conserving, folded-back 'OFF'-state of myosin, which results in increased number of heads free to interact with actin and produce force. While many characterized mutations likely act by directly perturbing intramolecular interfaces stabilizing the OFF-state, others may function allosterically by altering conformational states of the myosin motor. We investigate two such allosteric HCM mutations, Y115H (Transducer) and E497D (Relay helix), which do not directly contact OFF-state interfaces. Biochemical analyses and high-resolution crystallography reveal that both mutations increase active myosin head availability likely by destabilizing the pre-powerstroke conformation required for OFF-state formation. We propose that destabilization of the folded-back state of myosin, either directly or allosterically, represents a common molecular mechanism underlying hypercontractility in HCM across a broader spectrum of pathogenic mutations than previously recognized.


  • Organizational Affiliation
    • Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Myosin-7819Homo sapiensMutation(s): 1 
Gene Names: MYH7MYHCB
UniProt & NIH Common Fund Data Resources
Find proteins for P12883 (Homo sapiens)
Explore P12883 
Go to UniProtKB:  P12883
PHAROS:  P12883
GTEx:  ENSG00000092054 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP12883
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP

Download Ideal Coordinates CCD File 
C [auth A]ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
VO4
Query on VO4

Download Ideal Coordinates CCD File 
D [auth A]VANADATE ION
O4 V
LSGOVYNHVSXFFJ-UHFFFAOYSA-N
GOL
Query on GOL

Download Ideal Coordinates CCD File 
E [auth A]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
EDO
Query on EDO

Download Ideal Coordinates CCD File 
F [auth A],
G [auth A]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
B [auth A]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  2 Unique
IDChains TypeFormula2D DiagramParent
M3L
Query on M3L
A
L-PEPTIDE LINKINGC9 H21 N2 O2LYS
MLY
Query on MLY
A
L-PEPTIDE LINKINGC8 H18 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free:  0.255 (Depositor), 0.247 (DCC) 
  • R-Value Work:  0.207 (Depositor), 0.201 (DCC) 
  • R-Value Observed: 0.209 (Depositor) 
Space Group: P 43 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 93.553α = 90
b = 93.553β = 90
c = 220.48γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
autoPROCdata scaling
MOLREPphasing
Cootmodel building

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Fondation pour la Recherche Medicale (FRM)FrancePBR202306017868
Laboratories of Excellence (LabEx)FranceANR-11-LBX-0038
IdEx Universite Paris CiteFranceANR-10-IDEX-0001-02-PSL
Centre National de la Recherche Scientifique (CNRS)France--
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesNIH RM1 GM131981-01
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesNIH R01 GM033289

Revision History  (Full details and data files)

  • Version 1.0: 2025-10-22
    Type: Initial release