9HNR | pdb_00009hnr

Deposited: 2024-12-11 Released: 2025-12-24
Deposition Author(s): Cowgill, J., Fan, C., Howard, R.J., Lindahl, E.
Funding Organization(s): Swedish Research Council, European Molecular Biology Organization (EMBO)

Experimental Data Snapshot

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Green fluorescent protein,Gamma-aminobutyric acid receptor subunit alpha-5	A	679	Aequorea victoria, Homo sapiens	Mutation(s): 0 Gene Names: GFP, GABRA5
UniProt & NIH Common Fund Data Resources
Find proteins for P42212 (Aequorea victoria) Explore P42212 Go to UniProtKB: P42212
Find proteins for P31644 (Homo sapiens) Explore P31644 Go to UniProtKB: P31644
PHAROS: P31644 GTEx: ENSG00000186297
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P31644P42212
Glycosylation
Glycosylation Sites: 2	Glycosylation Focus chain A	Go to GlyGen: P31644-1
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Gamma-aminobutyric acid receptor subunit beta-3,Green fluorescent protein	B, C, D, E	623	Homo sapiens	Mutation(s): 0 Gene Names: GABRB3, GFP
UniProt & NIH Common Fund Data Resources
Find proteins for P28472 (Homo sapiens) Explore P28472 Go to UniProtKB: P28472
PHAROS: P28472 GTEx: ENSG00000166206
Find proteins for P42212 (Aequorea victoria) Explore P42212 Go to UniProtKB: P42212
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P42212P28472
Glycosylation
Glycosylation Sites: 2	Glycosylation Focus chain B Focus chain C Focus chain E	Go to GlyGen: P28472-1
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Megabody 25	F [auth P], G [auth Q], H [auth R]	541	Escherichia coli	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	I [auth F]	2		N-Glycosylation	Interactions Focus chain I [auth F] Interactions & Density Focus chain I [auth F]

Entity ID: 5
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	J [auth G], L [auth I], Q [auth N]	3		N-Glycosylation	Interactions Focus chain J [auth G] Focus chain L [auth I] Focus chain Q [auth N] Interactions & Density Focus chain J [auth G] Focus chain L [auth I] Focus chain Q [auth N]

Entity ID: 6
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	K [auth H], R [auth O]	6		N-Glycosylation	Interactions Focus chain K [auth H] Focus chain R [auth O] Interactions & Density Focus chain K [auth H] Focus chain R [auth O]

Entity ID: 7
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	M [auth J], O [auth L]	6		N-Glycosylation	Interactions Focus chain M [auth J] Focus chain O [auth L] Interactions & Density Focus chain M [auth J] Focus chain O [auth L]

Entity ID: 8
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	N [auth K], P [auth M]	3		N-Glycosylation	Interactions Focus chain N [auth K] Focus chain P [auth M] Interactions & Density Focus chain N [auth K] Focus chain P [auth M]

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EPE Query on EPE Download Ideal Coordinates CCD File SDF format, chain T [auth C] SDF format, chain U [auth E] MOL2 format, chain T [auth C] MOL2 format, chain U [auth E] mmCIF format, chain T [auth C] mmCIF format, chain U [auth E]	T [auth C], U [auth E]	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C₈ H₁₈ N₂ O₄ S JKMHFZQWWAIEOD-UHFFFAOYSA-N		Interactions Focus chain T [auth C] Focus chain U [auth E] Interactions & Density Focus chain T [auth C] Focus chain U [auth E]
ABU (Subject of Investigation/LOI) Query on ABU Download Ideal Coordinates CCD File SDF format, chain S [auth B] MOL2 format, chain S [auth B] mmCIF format, chain S [auth B]	S [auth B]	GAMMA-AMINO-BUTANOIC ACID C₄ H₉ N O₂ BTCSSZJGUNDROE-UHFFFAOYSA-N		Interactions Focus chain S [auth B] Interactions & Density Focus chain S [auth B]