9HAW | pdb_00009haw

F420-dependent glucose-6-phosphate dehydrogenase without ligand

PDB DOI: https://doi.org/10.2210/pdb9HAW/pdb

Classification: OXIDOREDUCTASE
Organism(s): Thermomicrobium roseum DSM 5159
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-11-05 Released: 2025-11-19
Deposition Author(s): Palm, G.J., Berndt, L., Lammers, M.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.22 Å
R-Value Free:
0.193 (Depositor), 0.160 (DCC)
R-Value Work:
0.173 (Depositor), 0.164 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Discovery of a coenzyme F420-dependent glucose-6-phosphate dehydrogenase from Thermomicrobium roseum

Last, M., Hasan, M., Hemmann, J.L., Kroeber, T.D.U., Palm, G.J., Lammers, M., Lackner, G.

To be published.

Macromolecule Content

Total Structure Weight: 762.06 kDa
Atom Count: 50,826
Modeled Residue Count: 6,090
Deposited Residue Count: 6,840
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Luciferase family protein	A B C D E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O [auth Q], P [auth R], Q [auth O], R [auth P]	380	Thermomicrobium roseum DSM 5159	Mutation(s): 0 Gene Names: trd_A0676
UniProt
Find proteins for B9L4G2 (Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2)) Explore B9L4G2 Go to UniProtKB: B9L4G2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B9L4G2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain AA [auth K] SDF format, chain BA [auth L] SDF format, chain CA [auth M] SDF format, chain DA [auth N] SDF format, chain EA [auth Q] SDF format, chain FA [auth R] SDF format, chain GA [auth O] SDF format, chain HA [auth P] SDF format, chain S [auth A] SDF format, chain T [auth C] SDF format, chain U [auth D] SDF format, chain V [auth E] SDF format, chain W [auth G] SDF format, chain X [auth H] SDF format, chain Y [auth I] SDF format, chain Z [auth J] MOL2 format, chain AA [auth K] MOL2 format, chain BA [auth L] MOL2 format, chain CA [auth M] MOL2 format, chain DA [auth N] MOL2 format, chain EA [auth Q] MOL2 format, chain FA [auth R] MOL2 format, chain GA [auth O] MOL2 format, chain HA [auth P] MOL2 format, chain S [auth A] MOL2 format, chain T [auth C] MOL2 format, chain U [auth D] MOL2 format, chain V [auth E] MOL2 format, chain W [auth G] MOL2 format, chain X [auth H] MOL2 format, chain Y [auth I] MOL2 format, chain Z [auth J] mmCIF format, chain AA [auth K] mmCIF format, chain BA [auth L] mmCIF format, chain CA [auth M] mmCIF format, chain DA [auth N] mmCIF format, chain EA [auth Q] mmCIF format, chain FA [auth R] mmCIF format, chain GA [auth O] mmCIF format, chain HA [auth P] mmCIF format, chain S [auth A] mmCIF format, chain T [auth C] mmCIF format, chain U [auth D] mmCIF format, chain V [auth E] mmCIF format, chain W [auth G] mmCIF format, chain X [auth H] mmCIF format, chain Y [auth I] mmCIF format, chain Z [auth J]	AA [auth K] BA [auth L] CA [auth M] DA [auth N] EA [auth Q] AA [auth K], BA [auth L], CA [auth M], DA [auth N], EA [auth Q], FA [auth R], GA [auth O], HA [auth P], S [auth A], T [auth C], U [auth D], V [auth E], W [auth G], X [auth H], Y [auth I], Z [auth J]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain AA [auth K] Focus chain BA [auth L] Focus chain CA [auth M] Focus chain DA [auth N] Focus chain EA [auth Q] Focus chain FA [auth R] Focus chain GA [auth O] Focus chain HA [auth P] Focus chain S [auth A] Focus chain T [auth C] Focus chain U [auth D] Focus chain V [auth E] Focus chain W [auth G] Focus chain X [auth H] Focus chain Y [auth I] Focus chain Z [auth J] Interactions & Density Focus chain AA [auth K] Focus chain BA [auth L] Focus chain CA [auth M] Focus chain DA [auth N] Focus chain EA [auth Q] Focus chain FA [auth R] Focus chain GA [auth O] Focus chain HA [auth P] Focus chain S [auth A] Focus chain T [auth C] Focus chain U [auth D] Focus chain V [auth E] Focus chain W [auth G] Focus chain X [auth H] Focus chain Y [auth I] Focus chain Z [auth J]