9H93 | pdb_00009h93

Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC6b) from a yeast expression system.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 9H93

This is version 1.1 of the entry. See complete history

Literature

Production of an immunogenic trivalent poliovirus virus-like particle vaccine candidate in yeast using controlled fermentation.

Sherry, L.Grehan, K.Bahar, M.W.Swanson, J.J.Fox, H.Matthews, S.Carlyle, S.Qin, L.Porta, C.Wilkinson, S.Robb, S.Clark, N.Liddell, J.Fry, E.E.Stuart, D.I.Macadam, A.J.Rowlands, D.J.Stonehouse, N.J.

(2025) NPJ Vaccines 10: 64-64

  • DOI: https://doi.org/10.1038/s41541-025-01111-2
  • Primary Citation Related Structures: 
    9H93, 9H94

  • PubMed Abstract: 

    The success of the poliovirus (PV) vaccines has enabled the near-eradication of wild PV, however, their continued use post-eradication poses concerns, due to the potential for virus escape during vaccine manufacture. Recombinant virus-like particles (VLPs) that lack the viral genome remove this risk. Here, we demonstrate the production of PV VLPs for all three serotypes by controlled fermentation using Pichia pastoris. We determined the cryo-EM structure of a new PV2 mutant, termed SC5a, in comparison to PV2-SC6b VLPs described previously and investigated the immunogenicity of PV2-SC5a VLPs. Finally, a trivalent immunogenicity trial using bioreactor-derived VLPs of all three serotypes in the presence of Alhydrogel adjuvant, showed that these VLPs outperform the current IPV vaccine in the standard vaccine potency assay, offering the potential for dose-sparing. Overall, these results provide further evidence that yeast-produced VLPs have the potential to be a next-generation polio vaccine in a post-eradication world.


  • Organizational Affiliation
    • Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK. L.W.Sherry@leeds.ac.uk.

Macromolecule Content 

  • Total Structure Weight: 97.26 kDa 
  • Atom Count: 5,474 
  • Modeled Residue Count: 696 
  • Deposited Residue Count: 879 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Capsid protein VP1301Poliovirus 2Mutation(s): 3 
UniProt
Find proteins for P06210 (Poliovirus type 2 (strain Lansing))
Explore P06210 
Go to UniProtKB:  P06210
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP06210
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Capsid protein, VP0340Poliovirus 2Mutation(s): 2 
UniProt
Find proteins for P06210 (Poliovirus type 2 (strain Lansing))
Explore P06210 
Go to UniProtKB:  P06210
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP06210
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Capsid protein VP3238Poliovirus 2Mutation(s): 1 
UniProt
Find proteins for P06210 (Poliovirus type 2 (strain Lansing))
Explore P06210 
Go to UniProtKB:  P06210
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP06210
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SPH
(Subject of Investigation/LOI)

Query on SPH



Download:Ideal Coordinates CCD File
D [auth A]SPHINGOSINE
C18 H37 N O2
WWUZIQQURGPMPG-MSOLQXFVSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.5.3
MODEL REFINEMENTPHENIX1.20.1-4487-000

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Bill & Melinda Gates FoundationUnited StatesRG.IMCB.I8-TSA-083

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-02
    Type: Initial release
  • Version 1.1: 2025-04-09
    Changes: Data collection, Database references