9GYF | pdb_00009gyf

Deposited: 2024-10-02 Released: 2025-10-15
Deposition Author(s): Chaplin, A.K., Malewicz, M.
Funding Organization(s): Medical Research Council (MRC, United Kingdom), The Lister Institute of Preventive Medicine

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
X-ray repair cross-complementing protein 6	A	609	Homo sapiens	Mutation(s): 0 Gene Names: XRCC6, G22P1 EC: 3.6.4 (PDB Primary Data), 4.2.99 (PDB Primary Data), 5.6.2.4 (UniProt), 4.2.99.18 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P12956 (Homo sapiens) Explore P12956 Go to UniProtKB: P12956
PHAROS: P12956 GTEx: ENSG00000196419
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P12956
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Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
X-ray repair cross-complementing protein 5	B	732	Homo sapiens	Mutation(s): 0 Gene Names: XRCC5, G22P2 EC: 3.6.4 (PDB Primary Data), 5.6.2.4 (UniProt), 4.2.99.18 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P13010 (Homo sapiens) Explore P13010 Go to UniProtKB: P13010
PHAROS: P13010 GTEx: ENSG00000079246
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P13010
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein PAXX	C	23	Homo sapiens	Mutation(s): 1
UniProt
Find proteins for Q9BUH6 (Homo sapiens) Explore Q9BUH6 Go to UniProtKB: Q9BUH6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9BUH6
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 4
DNA1	D	15	Homo sapiens
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 5
DNA2	E	16	Homo sapiens
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Reference Sequence

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PO4 (Subject of Investigation/LOI) Query on PO4 Download:Ideal Coordinates CCD File SDF format, chain F [auth B] MOL2 format, chain F [auth B] mmCIF format, chain F [auth B]	F [auth B]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain F [auth B] Interactions & Density Focus chain F [auth B]