9GV1 | pdb_00009gv1

NavMs F208L bound to sevoflurane

PDB DOI: https://doi.org/10.2210/pdb9GV1/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Magnetococcus marinus MC-1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2024-09-20 Released: 2025-10-01
Deposition Author(s): Hollingworth, D., Wallace, B.A.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.252 (Depositor), 0.252 (DCC)
R-Value Work:
0.221 (Depositor), 0.222 (DCC)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

NavMs F208L bound to sevoflurane

Hollingworth, D., Wallace, B.A.

To be published.

Macromolecule Content

Total Structure Weight: 33.75 kDa
Atom Count: 2,120
Modeled Residue Count: 253
Deposited Residue Count: 276
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ion transport protein	A	276	Magnetococcus marinus MC-1	Mutation(s): 1 Gene Names: Mmc1_0798
UniProt
Find proteins for A0L5S6 (Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1)) Explore A0L5S6 Go to UniProtKB: A0L5S6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0L5S6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PTY Query on PTY Download:Ideal Coordinates CCD File SDF format, chain F [auth A] MOL2 format, chain F [auth A] mmCIF format, chain F [auth A]	F [auth A]	PHOSPHATIDYLETHANOLAMINE C₄₀ H₈₀ N O₈ P NJGIRBISCGPRPF-KXQOOQHDSA-N		Interactions Focus chain F [auth A] Interactions & Density Focus chain F [auth A]
12P Query on 12P Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	DODECAETHYLENE GLYCOL C₂₄ H₅₀ O₁₃ WRZXKWFJEFFURH-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]
2CV Query on 2CV Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain D [auth A] SDF format, chain B [auth A] MOL2 format, chain E [auth A] MOL2 format, chain D [auth A] MOL2 format, chain B [auth A] mmCIF format, chain E [auth A] mmCIF format, chain D [auth A] mmCIF format, chain B [auth A]	B [auth A], D [auth A], E [auth A]	HEGA-10 C₁₈ H₃₇ N O₇ ITEIKACYSCODFV-ATLSCFEFSA-N		Interactions Focus chain B [auth A] Focus chain D [auth A] Focus chain E [auth A] Interactions & Density Focus chain B [auth A] Focus chain D [auth A] Focus chain E [auth A]
A1IPI (Subject of Investigation/LOI) Query on A1IPI Download:Ideal Coordinates CCD File SDF format, chain G [auth A] MOL2 format, chain G [auth A] mmCIF format, chain G [auth A]	G [auth A]	sevoflurane C₄ H₃ F₇ O DFEYYRMXOJXZRJ-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Interactions & Density Focus chain G [auth A]